DY260259

Overview
NameDY260259
Unique NameDY260259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1465 contig Ccv1_Contig1465:1..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.308e-19
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+M +HL++RV+P H++  N M + AGADR+Q GMR AFGKP  T A V   Q ++++     N   A+EAL  A  +FP P
Sbjct:   66 GRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFPVP 147          

HSP 2 Score: 40.4318 bits (93), Expect = 6.308e-19
Identity = 22/68 (32.35%), Postives = 36/68 (52.94%), Query Frame = 3
Query:   93 KPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            + Y +  + + +P  +I  YD+G       EFP  + +       ++  ALEAARIA N+YM + AG+
Sbjct:    3 RAYTRREYIKKIPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGR 67          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.063e-18
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            G+  +   +RV+P  +L  NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EAL     + P
Sbjct:   78 GRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLP 157          

HSP 2 Score: 55.4546 bits (132), Expect = 1.063e-18
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RPARCYR    + Y +  + R VP P++  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  + F
Sbjct:    4 RPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLF 84          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.382e-18
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G+  FH ++R +P HVL  NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++AL    ++ P P +
Sbjct:   78 GRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPAR 161          

HSP 2 Score: 50.0618 bits (118), Expect = 1.382e-18
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            R+P + YR +  K Y + ++  GVP  +I  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  F F
Sbjct:    3 RKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHF 84          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.796e-18
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G   + L++R +P  V+  +KM + AGADR+ +GMR AFG+P GT ARV  GQ+++      +N+   ++AL  A  + P P K
Sbjct:   78 GSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLPTPCK 161          

HSP 2 Score: 50.0618 bits (118), Expect = 1.796e-18
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +PAR Y +I    Y +  F  GVP P+I  +  G +KK   +F   + LV+ E   +   ALEAAR++ N+ +   AG D +
Sbjct:    4 KPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNY 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.037e-18
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVA-IGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F+L V  +P HV+  NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++  K  +   A++A   A  + P
Sbjct:   83 FYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159          

HSP 2 Score: 50.447 bits (119), Expect = 3.037e-18
Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  GVP P+I  + +G  KK   ++ F V L++ +   +   ALEAAR+   K M    G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKK---DYDFEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNE 80          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.132e-17
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+  FHL++R +P HVL  +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + ++ P P
Sbjct:   78 GRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTP 159          

HSP 2 Score: 48.9062 bits (115), Expect = 1.132e-17
Identity = 26/83 (31.33%), Postives = 45/83 (54.22%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            R+PAR YR +  K Y +  +  GVP  ++  +D+G      ++FP  + L + E   +   A+EAARI  N+ + +  G++ F
Sbjct:    3 RKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.471e-17
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G+  FHL++R  P HVL  NK  + AGADR+  GMR AFGK  GT ARV  GQ + SV         A+ +L    ++ P P +
Sbjct:   78 GRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPAR 161          

HSP 2 Score: 46.595 bits (109), Expect = 1.471e-17
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            R+PA+ YR +  K Y +  +  GVP  +I  +D+G      +++P  + +V  E   +   ALEAARI  N+ + +  G+  F
Sbjct:    3 RKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMG---NLTEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 2.026e-16
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F L V  +P HV+  NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++    K  +   A++A   A  + P
Sbjct:   83 FALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIP 159          

HSP 2 Score: 47.7506 bits (112), Expect = 2.026e-16
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  GVP P+I  + +G      D   + + LV+ EK  +   ALEAAR+   K +    G D
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGVPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSD 80          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.639e-16
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+M +HL++R +P HVL  NK  + AGADR+  GMR AFGK  GT AR    Q + +V    ++    ++AL     + P P
Sbjct:   78 GRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARCQQNQKIFTVFSNPASVEKIKDALRHGGHKLPSP 159          

HSP 2 Score: 44.2838 bits (103), Expect = 2.639e-16
Identity = 25/80 (31.25%), Postives = 41/80 (51.25%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            R+P   YR +  K Y +  +  G+P  ++  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + +  G+
Sbjct:    3 RKPNSMYRNLAKKAYTRKEYMGGIPGVKVVHFDMG---NLTSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGR 79          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.278e-15
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            GK+ + L++R +P H++  N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL  A  + P
Sbjct:   66 GKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLP 145          

HSP 2 Score: 46.2098 bits (108), Expect = 1.278e-15
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 3
Query:   93 KPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            +PY +  + R +P  +I  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGK 67          
The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL10_METTH6.308e-1945.1250S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_METM51.063e-1837.5050S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METPE1.382e-1839.2950S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_PICTO1.796e-1839.2950S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_METS53.037e-1842.8650S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METLZ1.132e-1742.6850S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_METMJ1.471e-1742.8650S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_SULTO2.026e-1642.8650S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_METHJ2.639e-1640.2450S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_METST1.278e-1537.5050S ribosomal protein L10e OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bp
GTTTCTTGGGTCCCTTGTTTAGTTGCCGAATACCTACCAGGGCTTTCGCC
CTGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAATCAATAAGCCGTA
TCCCAAATCCCGCTTTTGTCGTGGTGTGCCTGATCCCCAGATCAGGATCT
ATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTG
CCCTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGC
TGCTCGAATTGCTTGCAACAAATATATGGCCCAGTTTGCCGGGAAAGATG
CCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCCTATCAA
CAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGG
GTGCTTTCGGTAAACCCACGGGCACTTGTGCTAGAGTTGCCATTGGACAG
GTCCTCCTGTCAGTTCCCTGCAAGGATAGCAATAGTCTTCCTGCCCAAGA
GGCTCTTCCTCCTGCAAAGTTCCAGTTTCCCGGTCCCCCAAAAAATCCTT
GTCCGCAGAAAGTGGGGTTTCCCCAAGTTTAGCCCCAGTGATTATTTGAG
GTTCAAGTCCAAGAACCGTATTGTGCCCCAAGGGGTAATGGCCAAGCCTT
CTTGGATGTCCCGGACCCCTTGGCGAGTCCCCCACCCGGAAGAGCCTTTT
CCCACATGCCCCAGCTTACGGATTCGCCCCCTGAGCCCCACCTTTTCGAA
AAAATTTTCCCATTGCACGGTTTTTACTCCCGGGTACAGTAATTGCTCCG
CATGGCCAAGCTCCCCTCAATCCCCCTTTTTTCCAACCACCCGGCTTCCT
CCCCCTCTCTAACCTCACCCACACATCCCCCGCCCCTCCCCCCCCCTCTC
CCCCCACCGCCCTAAACCCCTGTCCCTTCTACACAACTCTCTTTCCCCCT
CTCCTCCCCACCTCCCCGCCGCCCGCGCCCTCCCTCACCCCCCCCCCCCC
ACACTCTCCTAACTACGACACTCCGCTCCGCTCGCCCCCTCCGCTCCACA
CCTTCCCCCCCCCTCCTACCGCCTTCCACACCTCCCTCTCTTCATCCCCC
CCCCCCCCCTCTCCT
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