DY260259 | Citrus Genome Database

Overview


Name	DY260259
Unique Name	DY260259
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1115

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig1465	contig	Ccv1_Contig1465:1..1115.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 3.626e-15
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEA 504
            + + +R  P  VL  NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++   +EA
Sbjct:   86 YKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEA 152

HSP 2 Score: 50.447 bits (119), Expect = 3.626e-15
Identity = 22/80 (27.50%), Postives = 45/80 (56.25%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            +PA  YR I    Y +  +  G+P  +I  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ +  G++
Sbjct:    4 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE 83

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.119e-15
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLP 159

HSP 2 Score: 40.4318 bits (93), Expect = 6.119e-15
Identity = 22/80 (27.50%), Postives = 36/80 (45.00%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K + +  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.033e-14
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1

Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARV-AIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            F + +  +P HVL  NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ +  K  +   A+EAL  A  + P
Sbjct:   83 FFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLP 159

HSP 2 Score: 40.817 bits (94), Expect = 1.033e-14
Identity = 22/80 (27.50%), Postives = 37/80 (46.25%), Query Frame = 3

Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            RP RCYR      Y +  +  G+P P+I  +  G       ++ + V L++ E   +   ALEA R    K +++  G +
Sbjct:    4 RPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSE 80

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.950e-14
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1

Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G+  + +++R  P  ++  NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA   A  +   P K
Sbjct:   81 GEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCK 164

HSP 2 Score: 46.595 bits (109), Expect = 2.950e-14
Identity = 22/82 (26.83%), Postives = 45/82 (54.88%), Query Frame = 3

Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            +  +PA  YR+I    Y +  +  G+P  +I  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ +  G+
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGE 82

BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.950e-14
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1

Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G+  + +++R  P  ++  NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA   A  +   P K
Sbjct:   81 GEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCK 164

HSP 2 Score: 46.595 bits (109), Expect = 2.950e-14
Identity = 22/82 (26.83%), Postives = 45/82 (54.88%), Query Frame = 3

Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            +  +PA  YR+I    Y +  +  G+P  +I  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ +  G+
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGE 82

The following BLAST results are available for this feature:

BLAST of DY260259 vs. ExPASy Swiss-Prot

BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
RL10_HALMA	3.626e-15	41.79	50S ribosomal protein L10e OS=Haloarcula marismort...	[more]
RL10_SULIY	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULIN	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULIM	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULIL	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULIK	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULIA	6.119e-15	45.45	50S ribosomal protein L10e OS=Sulfolobus islandicu...	[more]
RL10_SULSO	1.033e-14	44.16	50S ribosomal protein L10e OS=Sulfolobus solfatari...	[more]
RL10_HALSA	2.950e-14	34.52	50S ribosomal protein L10e OS=Halobacterium salina...	[more]
RL10_HALS3	2.950e-14	34.52	50S ribosomal protein L10e OS=Halobacterium salina...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP11YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bp
GTTTCTTGGGTCCCTTGTTTAGTTGCCGAATACCTACCAGGGCTTTCGCC
CTGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAATCAATAAGCCGTA
TCCCAAATCCCGCTTTTGTCGTGGTGTGCCTGATCCCCAGATCAGGATCT
ATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTG
CCCTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGC
TGCTCGAATTGCTTGCAACAAATATATGGCCCAGTTTGCCGGGAAAGATG
CCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCCTATCAA
CAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGG
GTGCTTTCGGTAAACCCACGGGCACTTGTGCTAGAGTTGCCATTGGACAG
GTCCTCCTGTCAGTTCCCTGCAAGGATAGCAATAGTCTTCCTGCCCAAGA
GGCTCTTCCTCCTGCAAAGTTCCAGTTTCCCGGTCCCCCAAAAAATCCTT
GTCCGCAGAAAGTGGGGTTTCCCCAAGTTTAGCCCCAGTGATTATTTGAG
GTTCAAGTCCAAGAACCGTATTGTGCCCCAAGGGGTAATGGCCAAGCCTT
CTTGGATGTCCCGGACCCCTTGGCGAGTCCCCCACCCGGAAGAGCCTTTT
CCCACATGCCCCAGCTTACGGATTCGCCCCCTGAGCCCCACCTTTTCGAA
AAAATTTTCCCATTGCACGGTTTTTACTCCCGGGTACAGTAATTGCTCCG
CATGGCCAAGCTCCCCTCAATCCCCCTTTTTTCCAACCACCCGGCTTCCT
CCCCCTCTCTAACCTCACCCACACATCCCCCGCCCCTCCCCCCCCCTCTC
CCCCCACCGCCCTAAACCCCTGTCCCTTCTACACAACTCTCTTTCCCCCT
CTCCTCCCCACCTCCCCGCCGCCCGCGCCCTCCCTCACCCCCCCCCCCCC
ACACTCTCCTAACTACGACACTCCGCTCCGCTCGCCCCCTCCGCTCCACA
CCTTCCCCCCCCCTCCTACCGCCTTCCACACCTCCCTCTCTTCATCCCCC
CCCCCCCCCTCTCCT