DY260259
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 1.419e-13 Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEAL 507 G+ + + +R P +L NK + AGADR+ GMR AFGKP GT AR+ + + ++ C+ ++ A++ L Sbjct: 81 GQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGL 152 HSP 2 Score: 45.0542 bits (105), Expect = 1.419e-13 Identity = 21/82 (25.61%), Postives = 45/82 (54.88%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 +PA YR++ Y + + G+P +I +++G + G ++P + L E+ + +LE+AR++ N+ M + G+D + Sbjct: 4 KPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNY 85
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 7.175e-12 Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEA 504 + + +R P V+ NK + AGADR+ GMR AFGK GT AR+ G+ + ++ C ++ A++A Sbjct: 86 YKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDA 152 HSP 2 Score: 43.1282 bits (100), Expect = 7.175e-12 Identity = 20/80 (25.00%), Postives = 42/80 (52.50%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299 +PA YR I Y + + G+P ++ Y +G + +++ + L+ E+ + +LEA+R++ N+ M + G+D Sbjct: 4 KPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGED 83
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 1.571e-11 Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEA 504 G+ + + +R P V+ NK + AGADR+ GMR AFGKP GT AR+ ++ + C + +EA Sbjct: 81 GEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEA 151 HSP 2 Score: 40.4318 bits (93), Expect = 1.571e-11 Identity = 19/79 (24.05%), Postives = 42/79 (53.16%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296 +PA YR I Y + + G+P +I +++G D++P + L E+ + +LE++R++ N+++ + G+ Sbjct: 4 KPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGE 82 The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bpback to top |