DY260259

Overview
NameDY260259
Unique NameDY260259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1465 contig Ccv1_Contig1465:1..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.419e-13
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEAL 507
            G+  + + +R  P  +L  NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ L
Sbjct:   81 GQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGL 152          

HSP 2 Score: 45.0542 bits (105), Expect = 1.419e-13
Identity = 21/82 (25.61%), Postives = 45/82 (54.88%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +PA  YR++    Y +  +  G+P  +I  +++G  + G  ++P  + L   E+  +   +LE+AR++ N+ M +  G+D +
Sbjct:    4 KPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNY 85          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.175e-12
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEA 504
            + + +R  P  V+  NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A
Sbjct:   86 YKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDA 152          

HSP 2 Score: 43.1282 bits (100), Expect = 7.175e-12
Identity = 20/80 (25.00%), Postives = 42/80 (52.50%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKD 299
            +PA  YR I    Y +  +  G+P  ++  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M +  G+D
Sbjct:    4 KPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGED 83          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.571e-11
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEA 504
            G+  + + +R  P  V+  NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA
Sbjct:   81 GEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEA 151          

HSP 2 Score: 40.4318 bits (93), Expect = 1.571e-11
Identity = 19/79 (24.05%), Postives = 42/79 (53.16%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            +PA  YR I    Y +  +  G+P  +I  +++G      D++P  + L   E+  +   +LE++R++ N+++ +  G+
Sbjct:    4 KPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGE 82          
The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL10_HALWD1.419e-1336.1150S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_NATPD7.175e-1237.3150S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_HALLT1.571e-1136.6250S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bp
GTTTCTTGGGTCCCTTGTTTAGTTGCCGAATACCTACCAGGGCTTTCGCC
CTGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAATCAATAAGCCGTA
TCCCAAATCCCGCTTTTGTCGTGGTGTGCCTGATCCCCAGATCAGGATCT
ATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTG
CCCTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGC
TGCTCGAATTGCTTGCAACAAATATATGGCCCAGTTTGCCGGGAAAGATG
CCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCCTATCAA
CAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGG
GTGCTTTCGGTAAACCCACGGGCACTTGTGCTAGAGTTGCCATTGGACAG
GTCCTCCTGTCAGTTCCCTGCAAGGATAGCAATAGTCTTCCTGCCCAAGA
GGCTCTTCCTCCTGCAAAGTTCCAGTTTCCCGGTCCCCCAAAAAATCCTT
GTCCGCAGAAAGTGGGGTTTCCCCAAGTTTAGCCCCAGTGATTATTTGAG
GTTCAAGTCCAAGAACCGTATTGTGCCCCAAGGGGTAATGGCCAAGCCTT
CTTGGATGTCCCGGACCCCTTGGCGAGTCCCCCACCCGGAAGAGCCTTTT
CCCACATGCCCCAGCTTACGGATTCGCCCCCTGAGCCCCACCTTTTCGAA
AAAATTTTCCCATTGCACGGTTTTTACTCCCGGGTACAGTAATTGCTCCG
CATGGCCAAGCTCCCCTCAATCCCCCTTTTTTCCAACCACCCGGCTTCCT
CCCCCTCTCTAACCTCACCCACACATCCCCCGCCCCTCCCCCCCCCTCTC
CCCCCACCGCCCTAAACCCCTGTCCCTTCTACACAACTCTCTTTCCCCCT
CTCCTCCCCACCTCCCCGCCGCCCGCGCCCTCCCTCACCCCCCCCCCCCC
ACACTCTCCTAACTACGACACTCCGCTCCGCTCGCCCCCTCCGCTCCACA
CCTTCCCCCCCCCTCCTACCGCCTTCCACACCTCCCTCTCTTCATCCCCC
CCCCCCCCCTCTCCT
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