DY260260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 4.810e-26 Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRR LGY YVNF +A RAL+ +NF KPIR+M+S RDPS +SG G +F+KN ++ +D +G F HF+ + A +I K N M L Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL 155
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.810e-26 Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRR LGY YVN++N + RALE LN+ G+P R+M+S RDP+ K+G G +F+KN + +D +G F H++ + A AI N M L Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26 Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRR LGY YVN+ +A RALE LNF G+P+R+M+S RDPS KSG G +F+KN K +D +G + F HF ++ A +AI N MFL Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFG-NILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFL 154
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26 Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRR LGY YVNF N ++ +AL+ LN+ G+P R+M+S RDPS K G G +F+KN + +D +G F HFD + A AI N M L Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26 Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 2 Query: 422 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 +SLY GDL+ VT++ L+DLF + VVSVRVCRD RR LGY Y+NFSN +A RA+E LN+ P +PIR+M S RDPS SG G IF+KN + +D +GT F F+ + A AI K N M + Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 8.204e-26 Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRR LGY YVN+++ RAL+ LN+ GKP R+M+S RDP+ K+G G +F+KN + +D +G F H++ + A AI N M L Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.072e-25 Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRR LGY Y+NF +A RAL+ +NF G+PIR+M+S RDP KSG G +F+KN + +D +G F HF+ ++ A +AI N M L Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.828e-25 Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVG+L+ +VT++ L+++FN +G V SVRVCRD TRR LGY YVNF N + RALE LN+ P +P R+M+S RDP+ K+G G I++KN + +D +G F H++ + A AI N M L Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLL 199
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.828e-25 Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRR LGY YVN+++ + +ALE LN+ G+P R+M+S RDP+ K+G G +F+KN + +D +G F H++ + A +AI N M L Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLL 218
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.118e-25 Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRR LGY YVN++ + +ALE LN+ G+P R+M+S RDP+ K+G G IF+KN + +D +G F H++ + A +AI N M L Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213 The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bpback to top |