DY260260

Overview
NameDY260260
Unique NameDY260260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 4.810e-26
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +V +S L+D F+  G V+S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF     KPIR+M+S RDPS  +SG G +F+KN ++ +D          +G                   F HF+  + A  +I K N M L
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL 155          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.810e-26
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD  TRR LGY YVN++N  +  RALE LN+    G+P R+M+S RDP+  K+G G +F+KN +  +D          +G                   F H++  + A  AI   N M L
Sbjct:   54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLL 208          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL   VT++ LY+ F+  G ++S+R+CRD  TRR LGY YVN+    +A RALE LNF    G+P+R+M+S RDPS  KSG G +F+KN  K +D          +G +                 F HF  ++ A +AI   N MFL
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFG-NILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFL 154          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD  TRR LGY YVNF N ++  +AL+ LN+    G+P R+M+S RDPS  K G G +F+KN +  +D          +G                   F HFD  + A  AI   N M L
Sbjct:   79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.282e-26
Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 2
Query:  422 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            +SLY GDL+  VT++ L+DLF  +  VVSVRVCRD   RR LGY Y+NFSN  +A RA+E LN+ P   +PIR+M S RDPS   SG G IF+KN +  +D          +GT                  F  F+  + A  AI K N M +
Sbjct:   49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 8.204e-26
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD  TRR LGY YVN+++     RAL+ LN+    GKP R+M+S RDP+  K+G G +F+KN +  +D          +G                   F H++  + A  AI   N M L
Sbjct:   41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLL 195          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.072e-25
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRR LGY Y+NF    +A RAL+ +NF    G+PIR+M+S RDP   KSG G +F+KN +  +D          +G                   F HF+ ++ A +AI   N M L
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.828e-25
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVG+L+ +VT++ L+++FN +G V SVRVCRD  TRR LGY YVNF N  +  RALE LN+ P   +P R+M+S RDP+  K+G G I++KN +  +D          +G                   F H++  + A  AI   N M L
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLL 199          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.828e-25
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRR LGY YVN+++  +  +ALE LN+    G+P R+M+S RDP+  K+G G +F+KN +  +D          +G                   F H++  + A +AI   N M L
Sbjct:   64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLL 218          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.118e-25
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRR LGY YVN++   +  +ALE LN+    G+P R+M+S RDP+  K+G G IF+KN +  +D          +G                   F H++  + A +AI   N M L
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLL 213          
The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP_DROME4.810e-2641.18Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_COCIM4.810e-2638.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1M_HUMAN6.282e-2641.83Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_SCHPO6.282e-2640.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH6.282e-2642.21Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI8.204e-2638.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABB_XENLA1.072e-2539.22Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_YARLI1.828e-2539.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB1.828e-2537.42Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR3.118e-2538.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bp
TTTACCTTTCCCTTAAAGTGAAAAAAAAAAAAAACCGACCCCCCACTAGT
TTACCTATCCCCTCCGCCCCGCCCTCCTCCCCGGCGCCCACAATTCCATT
ATCCCTCCTTCCCCTTCCCTCTCCCCCCCTTTCCCCATCCATCTGAGAGG
CCAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTAATTCCCTC
TTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAA
TAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAA
AAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTG
AGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCC
CATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGC
CAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAG
TGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGACCTCTCGGT
TACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCCAGGGCATTGGA
GATGCTGAACTTCCCCCCCTCCGATGGAAAGCCCATTAGGGTTATGTATT
CCCCTCGTGACCCAAGCCCTCCCAAAAGTGGCCCCGGGAAAATTTTCCTT
AAGAACCCAGAAAAGGGCCTTGACCCCCAACCTTTGCCCATACCTTTCCC
GCCTTGGGGAACCTCCCCCCCTGCCAGGTTGCCACCGACCCCCATGGGCC
CGCCAAGGGGCTAGGGATTTGACCATTTTGACCTGAGGAAGCCCGCCCCA
AAAGCCATTGGAAAATTTAACCGGATGTTTTTGGAAGGACCGCCAATTTT
AGGTGGGACCTTCCCCCCCCCCCCCCGGAAAAAAAACCCGGAAACCCCCC
AAAACCATTCCCCCCCTGGTTTCTTGAAAAAACCCCCCCCCAAACCCCCC
CCCAAAAAAAAACCCCCCAAAAAATTTTGTGGGGAAATAGCCCCCCCCCC
CCCACGCCCCTGTGGGAAGGGGGGGGAGGG
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