DY260260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 1.310e-23 Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++ LGY YVNF + +RA+E LN+ DG+P R+M+S RDPS ++G G IF+KN +D +G F H++ + A AI N M L Sbjct: 57 SASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLL 211
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 4.977e-23 Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++ LGY YVNF ++ +A+E LN+ +G+P R+M+S RDPS ++G G IF+KN +D +G F H++ + A AI N M L Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLL 204
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.501e-23 Identity = 63/152 (41.45%), Postives = 86/152 (56.58%), Query Frame = 2 Query: 422 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFN 871 TSLYVGDL A+V + L +LF+++G+ + S+ VCRD +T R LGY YVNF N +A RAL+ LN+ GKP R+M+S RDP+ K+ G IF+KN EKG+D +G + + HF+ A KAI K N Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFG-NILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVN 334
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.448e-22 Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD T+ LGY YVN+++ + +A++ LN+ +G+P R+M+S RDP+ K G G IF+KN +D +G F HF A AI N M + Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM 203
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.226e-22 Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVG+LE V+++ LYD+F+ +G V S+RVCRD T LGY YVNF + + +A+E LN+ GKP R+M+S RDPS K G G I++KN +D +G F HF+ A AI + M + Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLM 191
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.091e-21 Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFLE 886 SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRR LGY YVNF +A +AL+ +NF GK IR+M+S RD +SG G +F+KN +K +D +G F HF + A +AI + N L+ Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG-KILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724 +LYVGDL+ +VT+ LY F G + R+CRD TR PLGYGYVNF +A AL +NF +GKP R+M+S D KSG G IF+KN +K +D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724 +LYVGDL+ +VT+ LY F G + R+CRD TR PLGYGYVNF +A AL +NF +GKP R+M+S D KSG G IF+KN +K +D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724 +LYVGDL+ +VT+ LY F G + R+CRD TR PLGYGYVNF +A AL +NF +GKP R+M+S D KSG G IF+KN +K +D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724 +LYVGDL+ +VT+ LY F G + R+CRD TR PLGYGYVNF +A AL +NF +GKP R+M+S D KSG G IF+KN +K +D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118 The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bpback to top |