DY260260

Overview
NameDY260260
Unique NameDY260260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.310e-23
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++ LGY YVNF    + +RA+E LN+   DG+P R+M+S RDPS  ++G G IF+KN    +D          +G                   F H++  + A  AI   N M L
Sbjct:   57 SASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLL 211          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.977e-23
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++ LGY YVNF   ++  +A+E LN+   +G+P R+M+S RDPS  ++G G IF+KN    +D          +G                   F H++  + A  AI   N M L
Sbjct:   50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLL 204          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.501e-23
Identity = 63/152 (41.45%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  422 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFN 871
            TSLYVGDL A+V +  L +LF+++G+  + S+ VCRD +T R LGY YVNF N  +A RAL+ LN+    GKP R+M+S RDP+  K+  G IF+KN EKG+D          +G +                 + HF+    A KAI K N
Sbjct:  184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFG-NILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVN 334          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.448e-22
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD  T+  LGY YVN+++ +   +A++ LN+   +G+P R+M+S RDP+  K G G IF+KN    +D          +G                   F HF     A  AI   N M +
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM 203          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.226e-22
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVG+LE  V+++ LYD+F+ +G V S+RVCRD  T   LGY YVNF + +   +A+E LN+    GKP R+M+S RDPS  K G G I++KN    +D          +G                   F HF+    A  AI   + M +
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLM 191          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.091e-21
Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFLE 886
            SLYVGDL A+VT+  L+  F+ +G V+S+R+CRD  TRR LGY YVNF    +A +AL+ +NF    GK IR+M+S RD    +SG G +F+KN +K +D          +G                   F HF  +  A +AI + N   L+
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG-KILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP_PICGU1.310e-2336.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA4.977e-2335.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1B_DICDI6.501e-2341.45Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PABP_KLULA1.448e-2235.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO3.226e-2237.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN2.091e-2138.31Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP5_PONPY1.957e-1949.00Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.957e-1949.00Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU1.957e-1949.00Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA1.957e-1949.00Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bp
TTTACCTTTCCCTTAAAGTGAAAAAAAAAAAAAACCGACCCCCCACTAGT
TTACCTATCCCCTCCGCCCCGCCCTCCTCCCCGGCGCCCACAATTCCATT
ATCCCTCCTTCCCCTTCCCTCTCCCCCCCTTTCCCCATCCATCTGAGAGG
CCAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTAATTCCCTC
TTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAA
TAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAA
AAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTG
AGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCC
CATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGC
CAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAG
TGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGACCTCTCGGT
TACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCCAGGGCATTGGA
GATGCTGAACTTCCCCCCCTCCGATGGAAAGCCCATTAGGGTTATGTATT
CCCCTCGTGACCCAAGCCCTCCCAAAAGTGGCCCCGGGAAAATTTTCCTT
AAGAACCCAGAAAAGGGCCTTGACCCCCAACCTTTGCCCATACCTTTCCC
GCCTTGGGGAACCTCCCCCCCTGCCAGGTTGCCACCGACCCCCATGGGCC
CGCCAAGGGGCTAGGGATTTGACCATTTTGACCTGAGGAAGCCCGCCCCA
AAAGCCATTGGAAAATTTAACCGGATGTTTTTGGAAGGACCGCCAATTTT
AGGTGGGACCTTCCCCCCCCCCCCCCGGAAAAAAAACCCGGAAACCCCCC
AAAACCATTCCCCCCCTGGTTTCTTGAAAAAACCCCCCCCCAAACCCCCC
CCCAAAAAAAAACCCCCCAAAAAATTTTGTGGGGAAATAGCCCCCCCCCC
CCCACGCCCCTGTGGGAAGGGGGGGGAGGG
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