DY260260

Overview
NameDY260260
Unique NameDY260260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.957e-19
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLD 724
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR PLGYGYVNF    +A  AL  +NF   +GKP R+M+S  D    KSG G IF+KN +K +D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSID 118          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.887e-19
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKN 706
            T SLYVGDL  +VT+  LYD F +   + SVR+C+D S+ R L YGY NF + Q+A  A+E  N    +GK IRVM+S R P   ++G G +F+KN
Sbjct:   23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKN 118          

HSP 2 Score: 25.409 bits (54), Expect = 7.887e-19
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  757 GNLPPCQVATDPHGPAKGLGI*PF*PEEA 843
            GN+  C+VAT   G ++G G   F  E+A
Sbjct:  136 GNIVSCKVATLEDGKSRGYGFVQFEQEDA 164          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.774e-12
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  428 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKN 706
            L++GDL   VT+  L  +F +    VS +VC D  T++ LG+GY+NF + +EA +A+E LN+   +GK IR+M S R+ +  K+    +F  N
Sbjct:   93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSN 185          
The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP5_HUMAN1.957e-1949.00Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.957e-1949.00Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABPX_ARATH7.887e-1947.92Probable polyadenylate-binding protein At2g36660 O... [more]
PES4_YEAST1.774e-1238.71Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bp
TTTACCTTTCCCTTAAAGTGAAAAAAAAAAAAAACCGACCCCCCACTAGT
TTACCTATCCCCTCCGCCCCGCCCTCCTCCCCGGCGCCCACAATTCCATT
ATCCCTCCTTCCCCTTCCCTCTCCCCCCCTTTCCCCATCCATCTGAGAGG
CCAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTAATTCCCTC
TTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAA
TAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAA
AAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTG
AGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCC
CATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGC
CAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAG
TGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGACCTCTCGGT
TACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCCAGGGCATTGGA
GATGCTGAACTTCCCCCCCTCCGATGGAAAGCCCATTAGGGTTATGTATT
CCCCTCGTGACCCAAGCCCTCCCAAAAGTGGCCCCGGGAAAATTTTCCTT
AAGAACCCAGAAAAGGGCCTTGACCCCCAACCTTTGCCCATACCTTTCCC
GCCTTGGGGAACCTCCCCCCCTGCCAGGTTGCCACCGACCCCCATGGGCC
CGCCAAGGGGCTAGGGATTTGACCATTTTGACCTGAGGAAGCCCGCCCCA
AAAGCCATTGGAAAATTTAACCGGATGTTTTTGGAAGGACCGCCAATTTT
AGGTGGGACCTTCCCCCCCCCCCCCCGGAAAAAAAACCCGGAAACCCCCC
AAAACCATTCCCCCCCTGGTTTCTTGAAAAAACCCCCCCCCAAACCCCCC
CCCAAAAAAAAACCCCCCAAAAAATTTTGTGGGGAAATAGCCCCCCCCCC
CCCACGCCCCTGTGGGAAGGGGGGGGAGGG
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