DY260264

Overview
NameDY260264
Unique NameDY260264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260264_ssr45 microsatellite DY260264_ssr45:45..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.458e-32
Identity = 87/231 (37.66%), Postives = 127/231 (54.98%), Query Frame = 3
Query:  159 AGSIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNT---TKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPAL 842
            A SIGV YG+ ANNLPS   V+ L  + GI +++++  D  + KAL+GS I++ + +PN+ L  A    S A  WVQ N+ ++ P+ + + I +GN+  V P N    ++FLL AMKNV+ AL    L   IKVS+      L N+YP     FR E  +    P++ FL +     + N YP+F + SNT  +SL YALF +  G   AG    Y  LF A +   + A+
Sbjct:    9 AQSIGVCYGKAANNLPSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDL-EALANSSIANGWVQDNIRSHFPYVKFKYISIGNK--VSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREE-FKSFINPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALFTQQ-GTNSAG----YQNLFDAILDSMYFAV 230          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 9.342e-32
Identity = 92/230 (40.00%), Postives = 130/230 (56.52%), Query Frame = 3
Query:  165 SIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDL-PNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPG---VLDAGNGLRYFTLFKAQIHPFFPAL 842
            +IGV YG +ANNLP A++VVQL +S G+  ++++  DA  L AL GSGI + +D+  N++L S A   S A +WV+ NV  Y+P   I+ I  GNEV+      T+ ++PAM+N+  AL    L  +IKVS+ I   A+ N++P S G F    +  V +     L  TG+  + N YP+FAY+ N   I L+YA FR  PG   V D   GL    LF A +     AL
Sbjct:    1 TIGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVW---GGDTQNIVPAMRNLGAALKAPGL-GTIKVSTSIRFDAVTNTFPPSNGVFAQAYMTDVAR----LLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFR--PGTTTVRDPNTGLTSQCLFDAMVDAVVAAL 220          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.859e-31
Identity = 84/225 (37.33%), Postives = 119/225 (52.89%), Query Frame = 3
Query:  168 IGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPAL 842
            IGVNYG + ++LPS  KVV L K+  I  V++F  D  VL+AL  SG+ V +   N  L   A   S+A SWV   V  +        I  GNEV   P  +   +LPAMKN+  AL    L  S+ V++ +A S L  SYP S G+F  E   P   P+++ L  +G+  +VN YP+FAY ++   + LDYAL   +  V    NG+ Y  +F A +   + A+
Sbjct:    7 IGVNYGMMGSDLPSPDKVVALYKANNITDVRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVI--PGESAALVLPAMKNLEAALQAAGL--SVPVTTAMATSVLGTSYPPSQGTF-SEAALPTVGPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYALLSSSAAVAVTDNGVEYANMFDAILDAVYAAV 226          

HSP 2 Score: 21.1718 bits (43), Expect = 1.859e-31
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  874 VVTETGWP 897
            VV+ETGWP
Sbjct:  238 VVSETGWP 245          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.718e-31
Identity = 89/240 (37.08%), Postives = 134/240 (55.83%), Query Frame = 3
Query:  168 IGVNYGRIANNLPSASKVVQLLKSQG-IERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPS---FAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPH-NTTKFLLPAMKNVHEALVKYNLHSSIKVSSP--IALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPALAALKYHDL 866
            IGVNYG  A+NLPS + V   L ++  I+RVK+FD +   + A +G+ I + V LPN  L + A + +    A SW++ N++ Y P T +  +  GNE+ +    N    LLPAM+ + +AL    L + ++V++P  + + A  +  PS+A SFR      +F  ML F R TGS  MVN YP+F+Y   T    L+YALFR N G+ D    L Y ++  AQ+   + A+  L Y D+
Sbjct:   26 IGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGL-TGVRVTTPHYLGILAPSDGIPSNA-SFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPET----LNYALFRPNSGIYDPATKLNYTSMLDAQMDAIYTAMKKLGYGDV 259          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.150e-31
Identity = 87/228 (38.16%), Postives = 122/228 (53.51%), Query Frame = 3
Query:  159 AGSIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPAL 842
            AG IGV YG + + LPS S VV L K Q I+R++++  D   L AL GS I++ +D+P+  L   A   + A  WVQ+NV +Y    +   I VGNEV     +   FLL AM+N+  A+    L   +KVS+ IA     ++ P S G FR E  +   +P++ FL    S  +VN YP+F+Y  +T  I LDYALF      +D   G  Y  LF A +   + AL
Sbjct:   29 AGQIGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEV---KPSVGGFLLQAMQNIENAVSGAGL--EVKVSTAIATDTTTDTSPPSQGRFRDE-YKSFLEPVIGFLASKQSPLLVNLYPYFSYMGDTANIHLDYALFTAQ-STVDNDPGYSYQNLFDANLDSVYAAL 249          

HSP 2 Score: 22.3274 bits (46), Expect = 3.150e-31
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  874 VVTETGWPVQRGRKRKMGPSLEKTR 948
            VV+ETGWP +      +G S+E  +
Sbjct:  260 VVSETGWPTEGA----VGTSVENAK 280          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.301e-30
Identity = 91/226 (40.27%), Postives = 122/226 (53.98%), Query Frame = 3
Query:  165 SIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPAL 842
            SIGV YG   +NLP AS VVQL +S GI  ++++  DA  L ALSG+ I + +D+PN  L S A  PS A +WVQ NV A    +    I VGNEV       T  +LPAM+N++ AL    L  SIKVS+ +  S +   +P S G+F     +    P   +L+ TG+  + N YP+F+Y  N   I L YALF  +PG +       Y  LF A +  F  AL
Sbjct:   29 SIGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQASR-RSACRYIAVGNEV---SGGDTGSILPAMQNLNAALANAGLGGSIKVSTAVQ-SDVTQGFPPSQGTFS----QGYMAPSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALF-TSPGTVVQDGSNAYQNLFDALVDTFVSAL 244          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.612e-30
Identity = 78/198 (39.39%), Postives = 110/198 (55.56%), Query Frame = 3
Query:  255 VKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNT--TKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPAL 842
            ++++D ++  L+AL GSGI++ +D+PN  L S A   S A +WVQ NV  Y    +   I VGNEV     N    +++LPAMKNV  A+    L   IKVS+    S L  SYP SAGSF  +       P+++FL + GS  + N YP+F+Y  +T  I LDYALF  + GV+      +Y  LF A +   + AL
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSD-ASSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALFTAS-GVVVQDGSYQYQNLFDALLDALYAAL 196          

HSP 2 Score: 21.9422 bits (45), Expect = 2.612e-30
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  868 KRVVTETGWPVQRG 909
            K VV+E+GWP + G
Sbjct:  205 KIVVSESGWPSEGG 218          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.925e-30
Identity = 87/229 (37.99%), Postives = 121/229 (52.84%), Query Frame = 3
Query:  168 IGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYH-PHTQIEAIGVGNEVFVDPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPG---VLDAGNGLRYFTLFKAQIHPFFPAL 842
            IGV YG IANNLP   +VVQL +S+GI  ++++      ++AL GSGI++ +   N  +   A   S A SWV  NV  YH     I  I VGNE+        + +L AM+N+++AL    L   IKVS+ +    + NS+P S+  F     +P    +   L  T +  + N YP+FAY  N   I L+YA F+  PG   V DAGNGL Y  LF A +   + AL
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEI---TGGAAQSILAAMRNLNKALAAARL-GGIKVSTAVRFDVITNSFPPSSAVF----AQPYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQ--PGATPVRDAGNGLIYTNLFNAMVDAMYAAL 219          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.491e-29
Identity = 85/233 (36.48%), Postives = 125/233 (53.65%), Query Frame = 3
Query:  159 AGSIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFV--DPHNTTKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRENPGVLDAGNGLRYFTLFKAQIHPFFPALAAL 851
            A  IGV YG+IANNLPS   V++L  S  I++++++  +  V  AL GS I++ +D+PN+ L  A   PS    WVQ N+  + P  + + I VGNEV    D     +F+ PAM+N++ AL    L + IKVS+   L  L N+YP     FR E  +    P++ FL +     + N YP+F +    D + L YALF++  G+ DAG    Y  LF A +   + A   L
Sbjct:   23 AQPIGVCYGKIANNLPSDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDL-EALANPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDE-YKSFINPIIGFLSRHNLPLLANIYPYFGHAD--DNVPLPYALFKQQ-GLNDAG----YQNLFDALVDSMYFATEKL 246          
BLAST of DY260264 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.948e-29
Identity = 87/229 (37.99%), Postives = 119/229 (51.97%), Query Frame = 3
Query:  159 AGSIGVNYGRIANNLPSASKVVQLLKSQGIERVKVFDTDAAVLKALSGSGIKVTVDLPNELLFSAAKRPSFAFSWVQKNVAAYHPHTQIEAIGVGNEVFVDPHNT---TKFLLPAMKNVHEALVKYNLHSSIKVSSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFPMVNAYPFFAYESNTDVISLDYALFRE---NP----GVLDAGNGLRYFTLFKA 815
            A SIGV YG+ ANNLPS   V+ L  + GI ++++++ D  V  AL GS I++ +D+P + L S    PS A  WVQ N+  + P  + + I VGNE  V P N      F+ PAM+NV+ AL    L   IKVS+      L N+YP     FR E       P++ FL Q     + N YP+F +  NT  + L YALF +   NP     + DA     YF + KA
Sbjct:   29 AQSIGVCYGKHANNLPSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSLTD-PSRANGWVQDNIINHFPDVKFKYIAVGNE--VSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGE-FNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEANPAGYQNLFDALLDSMYFAVEKA 253          
The following BLAST results are available for this feature:
BLAST of DY260264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E13K_TOBAC2.458e-3237.66Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_HORVU9.342e-3240.00Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13F_HORVU1.859e-3137.33Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13B_WHEAT2.718e-3137.08Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E13A_ARATH3.150e-3138.16Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_MAIZE2.301e-3040.27Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_VITVI2.612e-3039.39Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13D_HORVU3.925e-3037.99Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13A_SOLLC1.491e-2936.48Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13G_TOBAC1.948e-2937.99Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YO23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260264 ID=DY260264; Name=DY260264; organism=Citrus clementina; type=EST; length=1033bp
CTTGGCTTGCACACTAAACCAGAACACTCACACCCCCAAACCCGCTCTCT
CTCTTTCCCTCTCTCCCTTTCATGCTCTGCTTCACCAAGAACCAGAGCAT
GGATTGTCTATTTGCTTTCTACTTTTTCTTACTTCTCTCCAGTTTCATTT
TTTCAGACGCGGGATCAATAGGAGTGAACTACGGCCGCATAGCCAACAAC
TTACCATCAGCATCCAAAGTCGTGCAGCTCCTCAAATCTCAAGGCATTGA
ACGCGTCAAAGTATTCGACACCGACGCGGCAGTCCTTAAAGCCCTATCCG
GATCCGGAATCAAAGTCACCGTCGACTTACCCAACGAGCTTCTATTCTCC
GCAGCCAAACGCCCCTCCTTTGCCTTCTCATGGGTCCAAAAAAACGTCGC
CGCTTACCACCCCCATACTCAAATCGAAGCCATTGGCGTCGGCAATGAAG
TGTTCGTCGACCCGCATAACACCACCAAGTTTCTCCTGCCCGCCATGAAA
AACGTCCACGAAGCTCTTGTCAAGTACAATCTCCACTCTTCCATTAAAGT
CTCGTCACCCATTGCCTTGAGCGCTTTGCAAAATTCTTACCCGTCATCAG
CCGGATCTTTCCGACCCGAATTGATCGAACCCGTTTTCAAGCCCATGTTG
AATTTCCTCCGCCAAACCGGTTCTTTCCCTATGGTCAATGCATACCCATT
TTTCGCCTACGAGTCAAACACTGACGTCATCTCTTTAGACTACGCTTTGT
TTAGGGAAAACCCCGGCGTCCTGGATGCGGGTAACGGGTTACGTTATTTC
ACCCTCTTCAAGGCCCAAATCCACCCCTTTTTCCCGGCCTTGGCTGCCTT
GAAGTACCATGACCTTCAAAAGGGTTGTAACGGAAACCGGGTGGCCCGTC
CAAAGGGGAAGAAAAAGGAAAATGGGGCCAAGCCTTGAAAAAACCCGCCG
CCTAAAAACGGAAAACCCCCCCCCCCAGAATACTTGAACGGGGGGGGGGG
GACCCCCCCCCGAAAACACAAGGGCCTAACCTC
back to top