DY260272

Overview
NameDY260272
Unique NameDY260272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1050
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260272_ssr587 microsatellite DY260272_ssr587:587..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.841e-46
Identity = 99/157 (63.06%), Postives = 112/157 (71.34%), Query Frame = 3
Query:   57 RRTNVFHPVSLDVWDPFHGFL-----SSALTNAPSFAR----ETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            RR+NVF P SLD+WDPF GF      SS+ +  PSF R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLP NAK EQ+KASMENGVLTVT            +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.167e-45
Identity = 94/158 (59.49%), Postives = 108/158 (68.35%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+P  F GRR+NVF P SLD+WDPF  F         S + E S F + R+DWKETP+AHVFKAD+PGL+           R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP NAKV +VKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFH----VPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.600e-45
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 3
Query:   57 RRTNVFHPVSLDVWDPFHGFLSSALTNA-----PSFAR----ETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            RR+NVF P SLD+WDPF GF   + + +     PSF R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP N K EQ+KASMENGVLTVT            +I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.434e-45
Identity = 87/139 (62.59%), Postives = 105/139 (75.54%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTV 443
            MS++PS F  +R+N+F P SLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEP------ARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.874e-44
Identity = 92/158 (58.23%), Postives = 107/158 (67.72%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS+F G R+NVF P SLD+WDPF  F         S + E S F N R+DWKET +AHV KAD+PGL+           R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP NAKVEQVKA MENGVLTVT             IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFH----VPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.403e-44
Identity = 96/159 (60.38%), Postives = 112/159 (70.44%), Query Frame = 3
Query:   27 MSLLPSLFRGRR-TNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+P +F  RR T+VF P S+DV+DPF       L    S + ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP NAK++QVKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 8.363e-44
Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 3
Query:   57 RRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            RR+NVF P SLD+WDPF     S +        +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP NAKV+QVKA MENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD--NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.092e-43
Identity = 91/145 (62.76%), Postives = 112/145 (77.24%), Query Frame = 3
Query:   27 MSLLPSLF--RGRRTNVFHPVSLD-VWDPFHGFLSSALTNAP--SFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVT 446
            MSL+P+ +   GRR+N+F P SLD +WDPF G L S L+  P    A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP NAKV+QVKA MENGVLTVT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.427e-43
Identity = 90/150 (60.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:   57 RRTNVFHPVSLDVWDPFHGFLSSALTNA--PSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            RR+NVF P SLD+WDPF GF   + + +  P    + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP N K EQ+KASMENGVLTVT            +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.863e-43
Identity = 88/148 (59.46%), Postives = 105/148 (70.95%), Query Frame = 3
Query:   57 RRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            RR+NVF P SLD+WDPF     S +        +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP NAKV+QVKA +ENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD--NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of DY260272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17A_ORYSJ6.841e-4663.0617.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP14_SOYBN1.167e-4559.4917.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ORYSJ2.600e-4560.5118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_HELAN4.434e-4562.5917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP15_SOYBN2.874e-4458.2317.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE6.403e-4460.3817.6 kDa class I heat shock protein OS=Solanum per... [more]
HS16B_ORYSJ8.363e-4460.1416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP11_CHERU1.092e-4362.7618.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS174_ORYSJ1.427e-4360.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ1.863e-4359.4616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260272 ID=DY260272; Name=DY260272; organism=Citrus clementina; type=EST; length=1050bp
TTTAATTAGCCTCCCCGTTTGCCCTAATGTCCCTCCTTCCAAGCCTCTTC
CGTGGCCGAAGAACCAACGTGTTCCATCCAGTTTCCTTAGATGTATGGGA
TCCTTTCCACGGGTTCTTGTCCTCTGCCCTTACCAACGCCCCCTCCTTCG
CTAGGGAAACATCCCCATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCCGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCCACAATGCTAAGGT
GGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTC
CTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGC
TAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATA
AATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTGTGTGTGTGTT
TGTTTTCTTCCCCTCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGT
TTGCAAGAGCTTCCGGAGCCAGTCTCCAGCCTTGTAACTAGTTTTTTAAA
TGATAAAAAAGTGTGATGCCATAAAATATATTTTGTAATGCCAGTAAAAA
AAAAAAAAAAAAAAAAAAAAAACCCCACTTTCCTGTACAAATTGGCCTTA
AAAAAAAGCCTTGCCTATCCATTTTGTGCCCCCAACCGGTCCCCATCCTT
CCAAATAAATCCTTATTTCCCCCCCCCCCGAAACCCCCCCAAAGGGAGTC
CCATTACCAGGGGCCCACCCGTTTCCCGGGCCCCCCCCGGCCCCCGGTCC
CAAAAATCCCCATGTTTACCTTCCCCCAAAAAAAAAATATTACCCCCCCG
GTTAAAAAAAACCCCCCCCGCCCCCCCAAGGAAACCCCCCCTTTTATCCC
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