DY260274

Overview
NameDY260274
Unique NameDY260274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10452 contig Ccv1_Contig10452:102..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260274 vs. ExPASy Swiss-Prot
Match: G6PI_GEOSF (Glucose-6-phosphate isomerase OS=Geobacter sp. (strain FRC-32) GN=pgi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.683e-11
Identity = 60/178 (33.71%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  179 GILLDYSRQNATLKTMDKLYQLAEAA--QLNNKINQMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLQFLANVDP--IDVAKSITGLNPETTLVVVVSKTFTTAET 700
            G++LD SR N      D  +QL E    Q   ++ ++  G   N  E R V H  LR P  A      K +  E+   L  IKEF+E I SG+     G     ++ +GIGGS LGP FV  AL +  + I         F  N DP  +D+  +  G   + TL +V+SK+  T ET
Sbjct:   21 GMMLDLSRMNFP----DDFFQLMEPLMQQALEQMAELERGGIANGDEKRMVGHYWLRNPELAPT----KEISSEIGFTLRAIKEFTENIHSGAISPPNGSRYTRMLIIGIGGSALGPQFVADALGSAKDKITPF------FFDNTDPDGMDLVLARIGSYLKETLTIVISKSGGTKET 184          
BLAST of DY260274 vs. ExPASy Swiss-Prot
Match: G6PI_CYAP7 (Glucose-6-phosphate isomerase OS=Cyanothece sp. (strain PCC 7424) GN=pgi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.683e-11
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  272 INQMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLQFLANVDPIDVAKSITGLNP--ETTLVVVVSKTFTTAET 700
            + ++  G   N  E R V H  LRAP + A N +   V  E+ + L +I+EF   +  G+    T     D+++VGIGGS LGP FV  AL  D   +       + F+ N DP  + + +T L    ++TLV+V SK+  T ET
Sbjct:   50 MEELEKGAIANPDEGRMVGHYWLRAP-ELAPNDE---VRKEITEPLKQIEEFVAKVLKGTIKPPTADKFTDIISVGIGGSALGPQFVSEALAGDFPPM------GIHFIDNTDPAGIDRVVTRLKDRLKSTLVIVTSKSGGTPET 184          
BLAST of DY260274 vs. ExPASy Swiss-Prot
Match: G6PI_CHLPN (Glucose-6-phosphate isomerase OS=Chlamydia pneumoniae GN=pgi PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.683e-11
Identity = 54/208 (25.96%), Postives = 95/208 (45.67%), Query Frame = 2
Query:  179 GILLDYSRQNATLKTMDKLYQLAEAAQLNNKINQMYNGEKIN-----STENRSVLHVALRA-PRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLQFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAPTLREWISTALGPFAVAKHMVAVS 784
            G    ++ +      +  L  LAE   L+  +  M  G+ +N      +E R  LH A RA   D++   + +++         ++K+F   +RS             +V +GIGGS LGP  ++ AL+       C   + + F++N+DP + A+ +  ++    LVVVVSK+ TT ET +N     ++   A    +   H +AV+
Sbjct:   45 GFTFSFATERLDDAILAALISLAEERGLHESMLAMQQGQVVNYIEGFPSEMRPALHTATRAWVTDSSFTGEAEDIAVRSRVEAQRLKDFLTKVRSQ---------FTTIVQIGIGGSELGPKALYRALRA-----YCPTDKHVHFISNIDPDNGAEVLDTIDCAKALVVVVSKSGTTIETAVNEAFFADYF--AKKGLSFKDHFIAVT 236          
The following BLAST results are available for this feature:
BLAST of DY260274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
G6PI_GEOSF8.683e-1133.71Glucose-6-phosphate isomerase OS=Geobacter sp. (st... [more]
G6PI_CYAP78.683e-1134.48Glucose-6-phosphate isomerase OS=Cyanothece sp. (s... [more]
G6PI_CHLPN8.683e-1125.96Glucose-6-phosphate isomerase OS=Chlamydia pneumon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260274 ID=DY260274; Name=DY260274; organism=Citrus clementina; type=EST; length=995bp
ATCCCTCTCTTTCCTTGGTTTCTCCTTCAGGATTTTGCAAATGGCTTCCT
CAACTCCAATTTGTGACACCGAGCCATGGAAGGACTTGAAGAACCATGTG
CAGGAAATTAAAAAGACTCATTTACGTGATTTGATGAGTGACACTGATCG
ATGCCAATCAATGATGGTGGAGTTTGATGGGATTCTGTTGGACTACTCAC
GGCAAAATGCCACGCTTAAGACAATGGACAAACTCTATCAACTGGCAGAG
GCTGCTCAACTCAATAATAAGATTAACCAGATGTACAATGGGGAAAAAAT
TAACAGCACAGAGAATAGGTCTGTGCTTCATGTAGCTCTTCGTGCTCCAA
GGGATGCTGCCATAAATAGTGATGGGAAGAATGTGGTTCCAGAAGTCTGG
AAAGTTCTGGACAAGATAAAAGAGTTTTCTGAGACAATCCGCAGTGGTTC
CTGGGTTGGAGCCACTGGAAAAGTATTGAAAGATGTTGTTGCCGTTGGTA
TTGGCGGCAGTTTCTTGGGTCCTCTCTTTGTGCACACTGCTCTCCAAACT
GATCTAGAAGCCATTGAATGTGCAAGAGGACGCCAGTTGCAATTTCTAGC
AAATGTTGATCCCATTGATGTTGCTAAAAGTATCACGGGACTAAACCCTG
AAACTACCCTTGTTGTGGTGGTTTCAAAGACTTTTACAACGGCTGAAACT
ATGCTGAATGCTCCAACCTTGAGAGAATGGATATCAACTGCTCTTGGGCC
CTTCGCAGTTGCAAAGCACATGGTGGCTGTCAGTACTAATCTTACGCTGG
TAAAAAAGTTTGGCATTGATCCTAATAATGCATTTTCCTTCCGGGGACTG
GGTTGGTGGTCCGGTATAATTGTTTGCCGTGCCGGCCGGGGTTTTTCCCC
CCGTCCCCTTCATAAGGGTTTCCCCATTTGTTGAAAAAATTCCTAAAGGG
GGGCCTGGAAACCTTTCACCCACCATTTTCCTTTCCCGCCCCCTT
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