DY260276

Overview
NameDY260276
Unique NameDY260276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD2_ARATH (ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.024e-14
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  167 LLRQ-PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD--EWTNEQVDALAEMGGNIA-------------VNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKY 478
            +LR+ PGN  CA+C +PDP W SL+ GV +CI+CSG+HR+LGVHISKV S+ LD   W    +D    +G                  ++K    T  ++ KP+   +   +  +I  KY
Sbjct:  472 ILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWEELLHHLDDDSEKGSTDTLASVSKPSSEDWFTLKEKYINGKY 591          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: YC8E_SCHPO (Uncharacterized protein C622.14 OS=Schizosaccharomyces pombe GN=SPCC622.14 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.337e-14
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  155 RLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN------IAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNFD 505
            +L+ L R P N+ C DC +P+P+W S + G+FIC+ CSG HR LGV  S V S+ +D W+  QV  + E+GGN      ++ +  + A   G++++       ++    IR + + +E+   D
Sbjct:    4 KLDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSERQV-KMMEVGGNSNAKTFLSTDPMFSA--AGSIREKYNTDIAEDLRQKIRAEVDGVEWVKVD 123          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARAP3_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Arap3 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.337e-14
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  161 ENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYE 481
            E +   P NRHCADC +  P W +++ GV IC +C+G HR+LG  ISKV S+KLD   W+NE V     +G + A      A  PG  +  +P+S    R +FI RKY+
Sbjct:  488 EKVWSNPANRHCADCRASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANCFWAGALPPG--EGLHPDSAPGPRGEFISRKYK 594          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: YAUA_SCHPO (Uncharacterized protein C26A3.10 OS=Schizosaccharomyces pombe GN=SPAC26A3.10 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.746e-14
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 2
Query:  185 NRHCADCGS-PDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNF 502
            N  CADCGS  D  W S++  V +CI+CSGIHRSLG HISK  S+ LD  + +    L ++ GN AVN+ YE        KP P      +  F ++KY +  F +F
Sbjct:  727 NSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSLSQQSKVLLCKI-GNAAVNRVYEKGLSNPSLKPKPEHNAQVKLAFAQKKYVEHAFIDF 832          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD3_ARATH (ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.746e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  158 LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNE-QVDALAEMGGNIAVNKKYE 397
            ++ L +  GN  CADCG+P+P W SL+ GV +CI+CSG+HR+LGVHISKV S+ LD    E  V +L +  GN   N  +E
Sbjct:  504 IDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQALGNTFANTVWE 584          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GXCDD_DICDI (Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum GN=gxcDD PE=4 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.281e-14
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  119 NSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSL---GVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKY 478
            NS   +  G  +  +N+     N +CA+CG+ DP WVS++ GV +C+ CS IH++L    V   + LSV          D + +  GNI  N KYE   P  L KPNP    + +  +I+ KY
Sbjct: 1248 NSKGSSGYGNNSCGDNINNDESNNNCAECGASDPSWVSINYGVVVCLDCSSIHKNLPEGNVKSVRSLSVAFS-------DIVKKQEGNIKANNKYEKNIPSGLTKPNPKDSYEIKLSWIKAKY 1363          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.478e-13
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  149 RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGNIAVN 385
            +A  + L   P N+ C DCG+ +P W S+  GVF+CI CSG+HRSLGVH+S + S +LD  W+  Q+  + ++GGN + N
Sbjct:   11 QAVFKRLRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASAN 89          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARAP3_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ARAP3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.931e-13
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  161 ENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKY 478
            E +     NR CADCGS  P W +++ GV IC +C+G HR+LG  ISKV S+KLD   W+NE V     +G + A         PG  +  +P++    R +FI RKY
Sbjct:  493 EKIWSNRANRQCADCGSSRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGTLPPG--EGLHPDATPGPRGEFISRKY 598          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.931e-13
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA 379
            +N++   +  + L  +  N+ C DC + +P W S++ G+F+CI CS +HRSLGVHIS V S  LD W++EQ+  +   G N A
Sbjct:    4 ENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRA 86          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGE1_YEAST (ADP-ribosylation factor GTPase-activating protein effector protein 1 OS=Saccharomyces cerevisiae GN=AGE1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.522e-13
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  107 TQH---ANSDPKNVSGPRARLENLLRQ--PGNRHCADCGSPDP-KWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN-EQVDALAEMGGNIAVNKKYEAYTPG-NLKKPNPNSFIDERSDFIRRKYEKLEF 493
            TQH   AN+   N    R  L +++R+    N  C DCGS    +WVS++    +CIKCSG+HRSLG HISK+ S+ LD +T+ E +  L     N  VN  YE+      +KK   NS   ERS FI  KY+  +F
Sbjct:  156 TQHFSFANAGASN----RDELLSIVRKIDKSNLKCCDCGSTATVEWVSINLLCILCIKCSGVHRSLGSHISKIRSLTLDNFTSLELMHLLQNNVSNSNVNAIYESNLRNFPVKKITANSDDSERSKFIIDKYQFKKF 288          
The following BLAST results are available for this feature:
BLAST of DY260276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AGD2_ARATH1.024e-1436.67ADP-ribosylation factor GTPase-activating protein ... [more]
YC8E_SCHPO1.337e-1433.33Uncharacterized protein C622.14 OS=Schizosaccharom... [more]
ARAP3_MOUSE1.337e-1442.20Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
YAUA_SCHPO1.746e-1442.06Uncharacterized protein C26A3.10 OS=Schizosaccharo... [more]
AGD3_ARATH1.746e-1449.38ADP-ribosylation factor GTPase-activating protein ... [more]
GXCDD_DICDI2.281e-1434.96Guanine exchange factor for Rac 30 OS=Dictyosteliu... [more]
ARFG2_XENTR1.478e-1345.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARAP3_HUMAN1.931e-1340.74Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGD10_ARATH1.931e-1340.96ADP-ribosylation factor GTPase-activating protein ... [more]
AGE1_YEAST2.522e-1340.88ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260276 ID=DY260276; Name=DY260276; organism=Citrus clementina; type=EST; length=1022bp
GTTACCCATTTGCTTTAACACAAAGAAGGAGATGATAAATGGCTTCGCTG
AGATTGTAGCAGCGTTCTGATGATTCTGGTCTTATATTTGGAGGCTGGAG
ATGGCAACCCAGCATGCAAATTCTGATCCCAAAAATGTTTCTGGTCCACG
AGCAAGGCTGGAGAATCTATTGAGGCAACCCGGTAATAGGCATTGTGCAG
ATTGTGGATCTCCTGATCCAAAATGGGTATCATTAAGTACTGGAGTGTTT
ATTTGTATCAAGTGTTCTGGTATTCATAGAAGCCTTGGAGTGCATATATC
AAAGGTTCTATCAGTGAAGCTTGATGAATGGACAAATGAACAAGTTGATG
CTTTGGCAGAAATGGGCGGCAATATTGCAGTAAACAAGAAGTATGAAGCT
TACACTCCTGGCAATCTCAAGAAACCAAATCCGAATTCGTTTATAGACGA
GCGCTCAGATTTTATCAGGAGAAAATACGAGAAGCTAGAATTTTTTAATT
TTGATGAACAGGCGTTATTATGCCCATATCCAGCTCCCCATAGACGTTCA
TCATCCTCCAGCACTAGTTCTTCAAGCCATGATAAGAAACATTACGAAAA
ACAAGCAACAAGACATCGTATTGGAATCGCATTTCGTAACAGCTGGGGAA
GAAAGGAATCTGAGAGTAAGAACTCTAGGAAGGCCAACTCACTGGTAGCT
ATGGTTGAGTTTGTTGGATTGATTAAGGTCCATGTGGTCAAAGGCACCAA
CCTAGCTGTTCGGGATGTTATGAACTAGCGATCCCTATGTCATCCTTGCT
CGGGGTCATCAAACGGTTAGAACGCGTGGAATAAAAAACCACCCGGATCC
CGGTTTGGAAGGAAAGTTCTATGGTTGTCATTTCCCAAAAACATTCCCCC
CCCCGAAAGTGCTTGTATAATGAAAAGGGACCCTTTTCCAACCTGAAGGA
CTTTTTGGGGGGGAAGGCCCGAATTTAAAATTCACCCCTTTTTAATGGAA
CCCCCCCCCCCCAACCCCGTTC
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