DY260276

Overview
NameDY260276
Unique NameDY260276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.618e-13
Identity = 36/90 (40.00%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  137 VSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 400
            ++ PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN    +  EA
Sbjct:    1 MASPRTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKFREFLEA 89          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.618e-13
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  116 ANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA-VNKKYEAYTPG 412
            A+S   N++        L  +  N+ C DC + +P W S++ G+F+CI CS  HR+LGVHIS V S  LD W+ EQ+  +   G N A V  K   +T G
Sbjct:    2 ASSSADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDG 101          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.583e-13
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA 379
            +N++        L  +  N+ C DC + +P W S+  G+F+CI CS +HRSLGVHIS V S  LD W+ EQ+  +   G N A
Sbjct:    4 ENLTDKNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRA 86          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_RAT (ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.252e-12
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  140 SGP-RARLENLLRQ----PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            +GP ++ ++ L ++    P N+ C DCG+  P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:    3 AGPSKSEIQTLFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCM-QVGGN 85          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.252e-12
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   21 PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSTWSWFQLRCM-QVGGN 85          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.252e-12
Identity = 34/81 (41.98%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  137 VSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 373
            ++ PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct:    1 MASPRTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 80          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GIT1_RAT (ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 45/123 (36.59%), Postives = 59/123 (47.97%), Query Frame = 2
Query:  143 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN---EQVDALAEMGGNIAVNKKY--EAYTPGNLKKPNPNSFIDE-RSDFIRRKYEKLEF 493
            GPRA +           CADC +PDP W S+S GV +C +C  +HRSLG HIS V  ++   W     + V  LA  G N          A      +K NP   +   +S+FIR KY+ L F
Sbjct:    5 GPRAEV-----------CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAF 116          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GIT1_MOUSE (ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 45/123 (36.59%), Postives = 59/123 (47.97%), Query Frame = 2
Query:  143 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN---EQVDALAEMGGNIAVNKKY--EAYTPGNLKKPNPNSFIDE-RSDFIRRKYEKLEF 493
            GPRA +           CADC +PDP W S+S GV +C +C  +HRSLG HIS V  ++   W     + V  LA  G N          A      +K NP   +   +S+FIR KY+ L F
Sbjct:    5 GPRAEV-----------CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAF 116          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GIT1_HUMAN (ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 45/123 (36.59%), Postives = 59/123 (47.97%), Query Frame = 2
Query:  143 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN---EQVDALAEMGGNIAVNKKY--EAYTPGNLKKPNPNSFIDE-RSDFIRRKYEKLEF 493
            GPRA +           CADC +PDP W S+S GV +C +C  +HRSLG HIS V  ++   W     + V  LA  G N          A      +K NP   +   +S+FIR KY+ L F
Sbjct:    5 GPRAEV-----------CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAF 116          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W   Q+  + ++GGN
Sbjct:   21 PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGN 85          
The following BLAST results are available for this feature:
BLAST of DY260276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ARFG1_RAT5.618e-1340.00ADP-ribosylation factor GTPase-activating protein ... [more]
AGD8_ARATH5.618e-1339.00Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH9.583e-1340.96Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG2_RAT1.252e-1242.86ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_BOVIN1.252e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_MOUSE1.252e-1241.98ADP-ribosylation factor GTPase-activating protein ... [more]
GIT1_RAT1.635e-1236.59ARF GTPase-activating protein GIT1 OS=Rattus norve... [more]
GIT1_MOUSE1.635e-1236.59ARF GTPase-activating protein GIT1 OS=Mus musculus... [more]
GIT1_HUMAN1.635e-1236.59ARF GTPase-activating protein GIT1 OS=Homo sapiens... [more]
ARFG2_PONAB1.635e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260276 ID=DY260276; Name=DY260276; organism=Citrus clementina; type=EST; length=1022bp
GTTACCCATTTGCTTTAACACAAAGAAGGAGATGATAAATGGCTTCGCTG
AGATTGTAGCAGCGTTCTGATGATTCTGGTCTTATATTTGGAGGCTGGAG
ATGGCAACCCAGCATGCAAATTCTGATCCCAAAAATGTTTCTGGTCCACG
AGCAAGGCTGGAGAATCTATTGAGGCAACCCGGTAATAGGCATTGTGCAG
ATTGTGGATCTCCTGATCCAAAATGGGTATCATTAAGTACTGGAGTGTTT
ATTTGTATCAAGTGTTCTGGTATTCATAGAAGCCTTGGAGTGCATATATC
AAAGGTTCTATCAGTGAAGCTTGATGAATGGACAAATGAACAAGTTGATG
CTTTGGCAGAAATGGGCGGCAATATTGCAGTAAACAAGAAGTATGAAGCT
TACACTCCTGGCAATCTCAAGAAACCAAATCCGAATTCGTTTATAGACGA
GCGCTCAGATTTTATCAGGAGAAAATACGAGAAGCTAGAATTTTTTAATT
TTGATGAACAGGCGTTATTATGCCCATATCCAGCTCCCCATAGACGTTCA
TCATCCTCCAGCACTAGTTCTTCAAGCCATGATAAGAAACATTACGAAAA
ACAAGCAACAAGACATCGTATTGGAATCGCATTTCGTAACAGCTGGGGAA
GAAAGGAATCTGAGAGTAAGAACTCTAGGAAGGCCAACTCACTGGTAGCT
ATGGTTGAGTTTGTTGGATTGATTAAGGTCCATGTGGTCAAAGGCACCAA
CCTAGCTGTTCGGGATGTTATGAACTAGCGATCCCTATGTCATCCTTGCT
CGGGGTCATCAAACGGTTAGAACGCGTGGAATAAAAAACCACCCGGATCC
CGGTTTGGAAGGAAAGTTCTATGGTTGTCATTTCCCAAAAACATTCCCCC
CCCCGAAAGTGCTTGTATAATGAAAAGGGACCCTTTTCCAACCTGAAGGA
CTTTTTGGGGGGGAAGGCCCGAATTTAAAATTCACCCCTTTTTAATGGAA
CCCCCCCCCCCCAACCCCGTTC
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