DY260276

Overview
NameDY260276
Unique NameDY260276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+  P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   21 PTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWLQLRCM-QVGGN 85          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.635e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W   Q+  + ++GGN
Sbjct:   21 PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM-QVGGN 85          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_RAT (ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  152 ARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            A  + L   P N+ C DCG+ +P W S+S GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   11 AIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGN 84          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_MOUSE (ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  152 ARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            A  + L   P N+ C DCG+ +P W S+S GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   11 AIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGN 84          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG1_HUMAN (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.135e-12
Identity = 34/81 (41.98%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  137 VSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN 373
            ++ PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V SV +D+W + +++ + + GGN
Sbjct:    1 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGN 80          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.788e-12
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGNIAVNKKYEAY 403
            P N+ C DCG+ +P W +++ GVF+CI CS +HR+LGVH++ V S  LD  WT  Q+ A+ ++GGN   N+ ++A+
Sbjct:   23 PPNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRAM-QLGGNGNANQFFKAH 97          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GIT2_MOUSE (ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.788e-12
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  194 CADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN---EQVDALAEMGGNIAVNKKYEAYTPGNL----KKPNPNSFI-DERSDFIRRKYEKLEF 493
            CADC  PDP W S++ G FIC +C  +HRSLG HIS+V  +K   W     + V+ L   G N     ++    P ++    +K NP   +   +++FIR KY+ L F
Sbjct:   11 CADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNNGANSI--WEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAF 116          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.641e-12
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGNIAVNKKYEAY 403
            P N+ C DCG+ +P W S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN + +  +  +
Sbjct:   20 PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASASSFFHQH 94          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GIT2_HUMAN (ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.756e-12
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  194 CADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN---EQVDALAEMGGNIAVNKKYEAYTPGNL----KKPNPNSFI-DERSDFIRRKYEKLEF 493
            CADC  PDP W S++ G F+C +C  +HRSLG HIS+V  +K   W     + V+ L   G N     ++    P ++    +K NP   +   +++FIR KY+ L F
Sbjct:   11 CADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI--WEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAF 116          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARAP1_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.756e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  185 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEK 484
            NR CADCG+P P W S++  V IC +C+G HR LG  +SKV S+K+D   WT   ++   ++ GN A N+ + A  P + +   P+S    R   +  KY +
Sbjct:  547 NRFCADCGAPQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTETLIELFLQL-GNGAGNRFWAANVPPS-EALQPSSSPSTRRCHLEAKYRE 646          
The following BLAST results are available for this feature:
BLAST of DY260276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ARFG2_MOUSE1.635e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_HUMAN1.635e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_RAT2.135e-1248.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MOUSE2.135e-1248.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_HUMAN2.135e-1241.98ADP-ribosylation factor GTPase-activating protein ... [more]
YQP4_CAEEL2.788e-1244.74Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
GIT2_MOUSE2.788e-1237.04ARF GTPase-activating protein GIT2 OS=Mus musculus... [more]
ARFG3_HUMAN3.641e-1243.42ADP-ribosylation factor GTPase-activating protein ... [more]
GIT2_HUMAN4.756e-1236.11ARF GTPase-activating protein GIT2 OS=Homo sapiens... [more]
ARAP1_HUMAN4.756e-1238.24Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260276 ID=DY260276; Name=DY260276; organism=Citrus clementina; type=EST; length=1022bp
GTTACCCATTTGCTTTAACACAAAGAAGGAGATGATAAATGGCTTCGCTG
AGATTGTAGCAGCGTTCTGATGATTCTGGTCTTATATTTGGAGGCTGGAG
ATGGCAACCCAGCATGCAAATTCTGATCCCAAAAATGTTTCTGGTCCACG
AGCAAGGCTGGAGAATCTATTGAGGCAACCCGGTAATAGGCATTGTGCAG
ATTGTGGATCTCCTGATCCAAAATGGGTATCATTAAGTACTGGAGTGTTT
ATTTGTATCAAGTGTTCTGGTATTCATAGAAGCCTTGGAGTGCATATATC
AAAGGTTCTATCAGTGAAGCTTGATGAATGGACAAATGAACAAGTTGATG
CTTTGGCAGAAATGGGCGGCAATATTGCAGTAAACAAGAAGTATGAAGCT
TACACTCCTGGCAATCTCAAGAAACCAAATCCGAATTCGTTTATAGACGA
GCGCTCAGATTTTATCAGGAGAAAATACGAGAAGCTAGAATTTTTTAATT
TTGATGAACAGGCGTTATTATGCCCATATCCAGCTCCCCATAGACGTTCA
TCATCCTCCAGCACTAGTTCTTCAAGCCATGATAAGAAACATTACGAAAA
ACAAGCAACAAGACATCGTATTGGAATCGCATTTCGTAACAGCTGGGGAA
GAAAGGAATCTGAGAGTAAGAACTCTAGGAAGGCCAACTCACTGGTAGCT
ATGGTTGAGTTTGTTGGATTGATTAAGGTCCATGTGGTCAAAGGCACCAA
CCTAGCTGTTCGGGATGTTATGAACTAGCGATCCCTATGTCATCCTTGCT
CGGGGTCATCAAACGGTTAGAACGCGTGGAATAAAAAACCACCCGGATCC
CGGTTTGGAAGGAAAGTTCTATGGTTGTCATTTCCCAAAAACATTCCCCC
CCCCGAAAGTGCTTGTATAATGAAAAGGGACCCTTTTCCAACCTGAAGGA
CTTTTTGGGGGGGAAGGCCCGAATTTAAAATTCACCCCTTTTTAATGGAA
CCCCCCCCCCCCAACCCCGTTC
back to top