DY260276

Overview
NameDY260276
Unique NameDY260276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.211e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   20 PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGN 84
[Close]
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.211e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   20 PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGN 84
[Close]
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.211e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  179 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD-EWTNEQVDALAEMGGN 373
            P N+ C DCG+ +P W S++ GVF+CI CSG HRSLGVH+S + S +LD  W+  Q+  + ++GGN
Sbjct:   20 PTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGN 84
[Close]
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: GLO3_YEAST (ADP-ribosylation factor GTPase-activating protein GLO3 OS=Saccharomyces cerevisiae GN=GLO3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.384e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:  185 NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDF---IRRKYE 481
            NR C DCG+ +P W S+  GV +CI+CS +HR++GVHI+ V S  LD+WT   +    ++GGN   +K  + +   N K+    + +D ++ +   + +KY+
Sbjct:   28 NRVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNMGVHITFVKSSTLDKWTINNLRRF-KLGGN---HKARDFFLKNNGKQLLNTANVDAKTKYTSPVAKKYK 125
The following BLAST results are available for this feature:
BLAST of DY260276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ARFG3_PONAB6.211e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA6.211e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN6.211e-1250.00ADP-ribosylation factor GTPase-activating protein ... [more]
GLO3_YEAST1.384e-1135.29ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260276 ID=DY260276; Name=DY260276; organism=Citrus clementina; type=EST; length=1022bp
GTTACCCATTTGCTTTAACACAAAGAAGGAGATGATAAATGGCTTCGCTG
AGATTGTAGCAGCGTTCTGATGATTCTGGTCTTATATTTGGAGGCTGGAG
ATGGCAACCCAGCATGCAAATTCTGATCCCAAAAATGTTTCTGGTCCACG
AGCAAGGCTGGAGAATCTATTGAGGCAACCCGGTAATAGGCATTGTGCAG
ATTGTGGATCTCCTGATCCAAAATGGGTATCATTAAGTACTGGAGTGTTT
ATTTGTATCAAGTGTTCTGGTATTCATAGAAGCCTTGGAGTGCATATATC
AAAGGTTCTATCAGTGAAGCTTGATGAATGGACAAATGAACAAGTTGATG
CTTTGGCAGAAATGGGCGGCAATATTGCAGTAAACAAGAAGTATGAAGCT
TACACTCCTGGCAATCTCAAGAAACCAAATCCGAATTCGTTTATAGACGA
GCGCTCAGATTTTATCAGGAGAAAATACGAGAAGCTAGAATTTTTTAATT
TTGATGAACAGGCGTTATTATGCCCATATCCAGCTCCCCATAGACGTTCA
TCATCCTCCAGCACTAGTTCTTCAAGCCATGATAAGAAACATTACGAAAA
ACAAGCAACAAGACATCGTATTGGAATCGCATTTCGTAACAGCTGGGGAA
GAAAGGAATCTGAGAGTAAGAACTCTAGGAAGGCCAACTCACTGGTAGCT
ATGGTTGAGTTTGTTGGATTGATTAAGGTCCATGTGGTCAAAGGCACCAA
CCTAGCTGTTCGGGATGTTATGAACTAGCGATCCCTATGTCATCCTTGCT
CGGGGTCATCAAACGGTTAGAACGCGTGGAATAAAAAACCACCCGGATCC
CGGTTTGGAAGGAAAGTTCTATGGTTGTCATTTCCCAAAAACATTCCCCC
CCCCGAAAGTGCTTGTATAATGAAAAGGGACCCTTTTCCAACCTGAAGGA
CTTTTTGGGGGGGAAGGCCCGAATTTAAAATTCACCCCTTTTTAATGGAA
CCCCCCCCCCCCAACCCCGTTC
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