DY260279

Overview
NameDY260279
Unique NameDY260279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.493e-21
Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y E+ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L
Sbjct:  237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 412          
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 3.493e-21
Identity = 55/183 (30.05%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L
Sbjct:  225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 400          
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.016e-20
Identity = 55/185 (29.73%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673
            R +N+D++ + + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L
Sbjct:  222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 397          
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.053e-13
Identity = 75/286 (26.22%), Postives = 123/286 (43.01%), Query Frame = 2
Query:    8 VLPLDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIA-KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDXXXXXXXXXXXXXTAKCKKVVCDPSHLPNKVRKV 805
            VL +D+NDYYG  S++L + Q+ KR+  NE     +                   SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V ++   + +T         T  + +  K+ L+   +  +  ++ L  D   LN    + ++R++ Y  S   + G  P +   Y G GEL Q F R +AV G TY LN  E  V F+                 +KV+  P+  P   + V
Sbjct:   72 VLHIDKNDYYGDTSATLTVDQI-KRWV-NEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNW---EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHV 346          
The following BLAST results are available for this feature:
BLAST of DY260279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAE1_MOUSE3.493e-2130.60Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN3.493e-2130.05Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT1.016e-2029.73Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST2.053e-1326.22Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260279 ID=DY260279; Name=DY260279; organism=Citrus clementina; type=EST; length=1065bp
CCTCCAGGTCCTGCCCTTGGACAGGAATGATTATTATGGAGGAGAGTCCT
CCTCCCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACAA
CCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCCC
GAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACTG
ATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTAT
AATAAAGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCGCTCAA
ATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCA
TTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAATG
GACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGTCTTGA
TGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATG
ATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTA
TACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACCATACATTTACCC
TCTGTATGGCCTTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTAGTGCTG
TTTATGGTGGGACGTATATGTTGAATAAACCTGAGTGCAAAGTAGAGTTT
GATGAAGAAGGTAAAGTAGTCGGTGTCCCCGTCGAAGGGGAAACTGCCAA
GTGCAAGAAAGTTGTTTGTGATCCTTCCCATTTGCCCAACAAGGTAAGGA
AGGTGGGCCGGGTTGCCAGGGCATCCCCTATATAACCCCCCCATCCCCAA
CCCCATGATTCCCCTTCGTGCCGGTTACCCTCCCCCAAAACCTTTGGGTC
CCAAAATCAACTTGTCCCCCTTCCGTGGTCCCACCCCCCCCTTGTTCCCC
CCAGGGCAATTTCTTTGCCTTCTTTTCCCCCCGACGCCAAAAACCGCCCC
CCCCCCACCCGAACCTTACCCCCGGGATTTATTCTTTTGGGGGCCCCCTC
CCAAAAAAATTTCCC
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