DY260279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.493e-21 Identity = 56/183 (30.60%), Postives = 100/183 (54.64%), Query Frame = 2 Query: 125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673 R +N+D++ K + + G L+ +LI ++V++Y FK + + +G V +VP + + S + + EKR KF + +Y E+ P ++ + T T E + L N F+ H++A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L Sbjct: 237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 412
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 3.493e-21 Identity = 55/183 (30.05%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673 R +N+D++ K + + G L+ +LI ++V++Y FK + + +G+V +VP + + S + + EKR KF + +Y E P ++G + +T E + L N + H++A+ + +D +K K + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L Sbjct: 225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 400
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.016e-20 Identity = 55/185 (29.73%), Postives = 101/185 (54.59%), Query Frame = 2 Query: 125 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML 673 R +N+D++ + + + G L+ +LI ++V++Y FK + + +G V +VP + + S + + EKR KF + +Y+E ++ + +EG T E + L N F+ H++A+ + +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L Sbjct: 222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL 397
BLAST of DY260279 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.053e-13 Identity = 75/286 (26.22%), Postives = 123/286 (43.01%), Query Frame = 2 Query: 8 VLPLDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIA-KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDXXXXXXXXXXXXXTAKCKKVVCDPSHLPNKVRKV 805 VL +D+NDYYG S++L + Q+ KR+ NE + SSRD+ +D+ PK + A L+ +LI + V +YL F+++ Y K+ T E + + KR KF +V ++ + +T T + + K+ L+ + + ++ L D LN + ++R++ Y S + G P + Y G GEL Q F R +AV G TY LN E V F+ +KV+ P+ P + V Sbjct: 72 VLHIDKNDYYGDTSATLTVDQI-KRWV-NEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNW---EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHV 346 The following BLAST results are available for this feature:
BLAST of DY260279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260279 ID=DY260279; Name=DY260279; organism=Citrus clementina; type=EST; length=1065bpback to top |