DY260288

Overview
NameDY260288
Unique NameDY260288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1042
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260288_ssr1026 microsatellite DY260288_ssr1026:1026..1035. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260288 vs. ExPASy Swiss-Prot
Match: 1433_ENCCU (14-3-3 protein homolog OS=Encephalitozoon cuniculi GN=ECU03_1010 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.630e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2 
Query:   77 EENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEE---LTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNQDHVSVIKEYRSQIENELRIXCDGIXSXFEFXXIXXGXLD---EFKVYILKMKGDY*GYLXEFKNGDEKKE 499
            EE +  A L++ AERY++M + M ++A T+  E+   L V  RNL SVAYKN++ +RR+SWR++ S  QK E + +   V VI E    +E EL   CD +        +         E+ ++ LKMKGDY  Y  E   G E  E
Sbjct:    7 EEALQKANLSDMAERYDDMAKEM-RLAVTLAHEDKHILNVMARNLFSVAYKNLVSSRRSSWRMLCSERQKLEGK-DPSVVHVINEKIKVVEEELLRFCDEVLDIITTYILSLEEAQKNIEYNIFFLKMKGDYYRYKAEVVTGPEHSE 151
The following BLAST results are available for this feature:
BLAST of DY260288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
1433_ENCCU3.630e-1537.4114-3-3 protein homolog OS=Encephalitozoon cuniculi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YA16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260288 ID=DY260288; Name=DY260288; organism=Citrus clementina; type=EST; length=1042bp
TCCTCCCTAAAATTTCGATCGAATCCGTATTCCCCAACCTTAAAACGCTA
AGATGTCCCCTACTGATTCCTCTCGCGAGGAAAATGTCTACATGGCCAAG
CTGGCCGAGCAGGCTGAACGTTATGAGGAAATGGTTGAGTTCATGGAAAA
AGTTGCCAAAACAGTTGATGTTGAGGAGCTAACCGTGGAGGAAAGGAACC
TTCTCTCCGTTGCCTACAAGAATGTGATTGGGGCCAGGAGGGCTTCCTGG
AGGATCATCTCTTCGATTGAGCAGAAGGAGGAGAGCAGGGGAAACCAAGA
CCATGTCTCAGTAATTAAGGAGTACAGGAGCCAGATTGAGAATGAGCTCC
GCATCATNTGTGATGGGATTNTTAGTNNTTTTGAGTTTNATNTTATTTNN
TNTGGTTNATTGGATGAGTTTAAGGTGTATATATTGAAGATGAAGGGTGA
TTATTAGGGGTATTTGGNTGAGTTTAAGAATGGAGATGAGAAGAAGGAAG
ATTGGGATGAGAATTGGGTGATATATAAGTTAATTGGGATAGTGATTTAG
TTTAGTTGAATATAATTAAGTAATAAGTAAGGTGTGGTATATAGGATTTT
AGTGTTATGATTAGAAAAATGTTTATTATGTTAAAGGGGTAAGATTAGGA
TATATTTGATTAGTTATGAATTATTAGAGATATATTGTGTGTGTATGAAT
TTGGATGAGGAGGAGGGAATTGAAAGTGATTTAGTTATATAGATGGAGAA
TAAAATAATTTAATATGATTAATAAGGATGTAAGAATGAGTGTTATGAAG
TGTTTTAGGTATGGTTTTTTTTATAAAATTTAGATAAATATAGGTGAATA
GTATAGAAATATAGAAATGGAGTTATTATTAGATGTGAATTATTAAAAGG
ATATGAAATATTGAAGAGGAGAGGGAAGGGGAAGTATAAAGATGGATAAG
GAATGGGGTTTTTAGATTGTAAATGTTTATAATAAGTAATAGTAAATAAA
ATATTAAAAATAAGAAAAAATAAAAATATATATATAAAATAA
back to top