DY260292

Overview
NameDY260292
Unique NameDY260292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.281e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.673e-37
Identity = 79/123 (64.23%), Postives = 89/123 (72.36%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQMNDRQSPF 572
            +AAVA+E  K L I ++ VAPPQ GEV +KI  T +CHTDA+T SG DPEGLFP +LGHE AGIV  VGEGVT VQ GDHVIP Y AEC +C FC+SGKTNLC  VR   G GV M D  S F
Sbjct:    4 RAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGV-MPDGTSRF 125          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.673e-37
Identity = 78/123 (63.41%), Postives = 88/123 (71.54%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQMNDRQSPF 572
            +AAVA+ P   L I ++ VAPP+ GEV +KI  T +CHTDAYT SG DPEGLFP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC FC SGKTNLC  VR   G GV M D  S F
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGV-MPDATSRF 125          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.416e-36
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  204 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            +AAVA+ P K L I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y   C EC+FC+SGKTNLC  VR   G G+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGL 117          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 3.636e-36
Identity = 78/139 (56.12%), Postives = 93/139 (66.91%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQ---MNDRQSPFLQK 581
            M T+G+VI CKAA+AWE  K L IE+V+VAPP+A EVRI+I+ T+LCHTDA     K     FP I+GHEAAGIVES+G GVT V+PGD VIP Y   CR+CKFC S  TNLCGK+            M D+ S F  K
Sbjct:    1 MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCK 139          

HSP 2 Score: 22.3274 bits (46), Expect = 3.636e-36
Identity = 10/33 (30.30%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKD 669
            F+  G P++ F GTST + +  +   +L+   D
Sbjct:  136 FTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDD 168          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.363e-35
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQMNDRQSPFLQKWD 587
            M T+G+VITCKAAVAW   + LV+EDV+V PPQ  EVRI+ILFT++CHTD   W G+ + +  +P ILGHEAAGIVESVGEGV E+  GDHV+P +  EC +C+ CK    NLC + R      V + D ++ F    D
Sbjct:    1 METQGKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEEMMAGDHVLPIFTGECGDCRVCKRDGANLCERFRVDPMKKVMVTDGKTRFFTSKD 139          

HSP 2 Score: 23.483 bits (49), Expect = 1.363e-35
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  562 RALFSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPLRTK*ALPSC 711
            R   SK+  PI+ FL TST + +  +  ++     DP  PL  K +L SC
Sbjct:  133 RFFTSKDNKPIYHFLNTSTFSEY-TVIDSACVLKVDPLFPLE-KISLLSC 180          
The following BLAST results are available for this feature:
BLAST of DY260292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
FRMA_ECOL51.281e-3763.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK11.281e-3763.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS1.281e-3763.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO571.281e-3763.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.281e-3763.16S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_SYNY31.673e-3764.23S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FRMA_PASPI1.673e-3763.41S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
FRMA_ECOL62.416e-3661.40S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH4_HUMAN3.636e-3656.12Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADHL4_ARATH1.363e-3552.52Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260292 ID=DY260292; Name=DY260292; organism=Citrus clementina; type=EST; length=1116bp
GGTGTGTTTGGTAGAATCAATAATAGAGGGAGCTACTTTAGAAAAATCTC
ACATCTGTTGCCGGCAGCCACTCTCAGACCGTGTCACGTCCCTTTTTAAT
AATAATATCTATCTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCAT
TCTCATTTTCATTGTCAGCAGCCATGTCTACTGAAGGTCAAGTCATCACA
TGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTGAGGA
TGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCT
TCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGATCCT
GAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGTGGA
GAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCATCC
CTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCCGGAAAG
ACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGCGCCGGTGTCCAGAT
GAATGACCGCCAGAGCCCTTTTCTCCAAAAATGGGACACCCATCCATCCC
TTCCTGGGAACCTCAACCTCTACCCCCCACCCCCCCCTTTGCAGGACGTC
ACTGTCCACAAACAAAGACCCACCCACGCCCCTTCGAACAAAATAAGCCC
TCCCTTCCTGCAGGCGGCCCCACCCCTCTCATGAAGACACCGCGAACACC
CAACAAAAACAAACACCCGGACCCAACAACTCCGCAACAATATGCCCCAA
GGAACCGCTCCCCCCGATTCCAGGGCGCACACGGTCCCTAACAGACGATC
CTACACCCCCCACCCGATAATACGGCCAATCCTACCAGTCACCCCACAAT
CCCCTCTCGCCCGCACACCTCACAGCACCTCTCACCCACCCTACCACCCC
TCCTCACATCGCCCCCCAACACAGATACTACCCACCTCTCTCCCACACAG
TCCTGCCTACTGGCCCCACACCCCCAGAACCGCCCCCAGCGACCACCCAT
CTCACCTCTGGCGAACATACACCCCCTCACCCTTCACGTAAACTCACCCC
AACTCTATCCCAACCC
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