DY260292

Overview
NameDY260292
Unique NameDY260292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 6.410e-32
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQMNDRQSPF 572
            MST G+VI CKAAV WEP+K   IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC + +  T     + D  S F
Sbjct:    1 MSTAGKVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPL-PAVLGHEGAGIVESIGEGVTCVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLDGTSRF 132          

HSP 2 Score: 24.2534 bits (51), Expect = 6.410e-32
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            FS  G PIH F+ TST
Sbjct:  132 FSCRGKPIHHFISTST 147          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.410e-32
Identity = 68/114 (59.65%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  177 STEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            ST G+VI CKAAV WEP K   IE+V+VAPP+A EVR+KI+ T +C +D +  SG      FP ILGHEAAG+VESVGEGVT V+PGD VIP +  +C EC  C S K NLC K
Sbjct:    1 STAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMP-FPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSVCLSTKGNLCRK 113          

HSP 2 Score: 25.0238 bits (53), Expect = 6.410e-32
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPLCRTSLS 657
            F+  G  IH F GTST T +  L  T+++
Sbjct:  130 FTCKGKAIHHFAGTSTFTEYTVLHETAVA 158          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.401e-31
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE  K   IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLK 114          

HSP 2 Score: 26.1794 bits (56), Expect = 2.401e-31
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            F+  G PIH FLGTST
Sbjct:  131 FTCRGKPIHHFLGTST 146          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.126e-31
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE  K   IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CKS + N C K
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKSPEGNYCVK 114          

HSP 2 Score: 25.0238 bits (53), Expect = 3.126e-31
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            F+  G PIH F+GTST
Sbjct:  131 FTCRGKPIHHFVGTST 146          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.126e-31
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE  K   IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLK 114          

HSP 2 Score: 26.1794 bits (56), Expect = 3.126e-31
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            F+  G PIH FLGTST
Sbjct:  131 FTCRGKPIHHFLGTST 146          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 3.992e-31
Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQ---MNDRQSPFLQK 581
            M T+G+VI CKAA+AW+    L IE+++V+PP+A EVRI+++ T +C TD      K  + LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C+ CK C S  TNLCGK+R      +    M DR S F  K
Sbjct:    1 MGTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCK 138          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.301e-31
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 512
            MST G+VI C+AAV WE NK   IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLC 112          

HSP 2 Score: 26.5646 bits (57), Expect = 5.301e-31
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  553 MTARALFSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPL 684
            M   + F+  G PIH FLG +T + +  +   S+ T  D  +PL
Sbjct:  125 MDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISV-TKIDATSPL 167          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.301e-31
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 512
            MST G+VI C+AAV WE NK   IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLC 112          

HSP 2 Score: 26.5646 bits (57), Expect = 5.301e-31
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  553 MTARALFSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPL 684
            M   + F+  G PIH FLG +T + +  +   S+ T  D  +PL
Sbjct:  125 MDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISV-TKIDAASPL 167          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.988e-31
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  177 STEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            +T G+VI CKAAV W P + L IE+++VAPP+  EVR+KI+ T +C +D +  SG   +  FP ILGHEAAG+VESVGEGVT+ +PGD VIP +  +C EC+ CK+ ++NLC K
Sbjct:    1 ATAGKVIKCKAAVCWGPKQPLSIEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYK 114          

HSP 2 Score: 21.9422 bits (45), Expect = 8.988e-31
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPL 639
            F+  G  IH F+ TST T +  L
Sbjct:  131 FTCKGKSIHNFISTSTFTEYTVL 153          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.988e-31
Identity = 66/124 (53.23%), Postives = 82/124 (66.13%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV 545
            M T G+VI CKAAV WE  +   IE+++VAPP+  EVRIKIL T +C TD +   G      FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG GV
Sbjct:    1 MGTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGT-MVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGRGV 122          

HSP 2 Score: 26.9498 bits (58), Expect = 8.988e-31
Identity = 12/37 (32.43%), Postives = 20/37 (54.05%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTP 681
            F+  G P+H F+ TST T +  +  +S++   D   P
Sbjct:  130 FTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPP 166          
The following BLAST results are available for this feature:
BLAST of DY260292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ADH1_RAT6.410e-3251.13Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1_STRCA6.410e-3259.65Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1B_PANTR2.401e-3158.26Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_PAPHA3.126e-3159.13Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1B_HUMAN3.126e-3158.26Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH4_MOUSE3.992e-3149.64Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_GEOBU5.301e-3156.64Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_GEOAT5.301e-3156.64Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_RANPE8.988e-3154.39Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH7_HUMAN8.988e-3153.23Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260292 ID=DY260292; Name=DY260292; organism=Citrus clementina; type=EST; length=1116bp
GGTGTGTTTGGTAGAATCAATAATAGAGGGAGCTACTTTAGAAAAATCTC
ACATCTGTTGCCGGCAGCCACTCTCAGACCGTGTCACGTCCCTTTTTAAT
AATAATATCTATCTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCAT
TCTCATTTTCATTGTCAGCAGCCATGTCTACTGAAGGTCAAGTCATCACA
TGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTGAGGA
TGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCT
TCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGATCCT
GAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGTGGA
GAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCATCC
CTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCCGGAAAG
ACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGCGCCGGTGTCCAGAT
GAATGACCGCCAGAGCCCTTTTCTCCAAAAATGGGACACCCATCCATCCC
TTCCTGGGAACCTCAACCTCTACCCCCCACCCCCCCCTTTGCAGGACGTC
ACTGTCCACAAACAAAGACCCACCCACGCCCCTTCGAACAAAATAAGCCC
TCCCTTCCTGCAGGCGGCCCCACCCCTCTCATGAAGACACCGCGAACACC
CAACAAAAACAAACACCCGGACCCAACAACTCCGCAACAATATGCCCCAA
GGAACCGCTCCCCCCGATTCCAGGGCGCACACGGTCCCTAACAGACGATC
CTACACCCCCCACCCGATAATACGGCCAATCCTACCAGTCACCCCACAAT
CCCCTCTCGCCCGCACACCTCACAGCACCTCTCACCCACCCTACCACCCC
TCCTCACATCGCCCCCCAACACAGATACTACCCACCTCTCTCCCACACAG
TCCTGCCTACTGGCCCCACACCCCCAGAACCGCCCCCAGCGACCACCCAT
CTCACCTCTGGCGAACATACACCCCCTCACCCTTCACGTAAACTCACCCC
AACTCTATCCCAACCC
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