DY260292

Overview
NameDY260292
Unique NameDY260292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.161e-30
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            M T+G+VI CKAA+AWE  K L IE+V+VAPP+A EVR++I    LC +D +  + K      P ILGHE AGIVESVG GVT V+PGD VIP Y   C++CKFC S  TN C K
Sbjct:    1 MGTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPKFEGAFLPVILGHEGAGIVESVGPGVTNVKPGDKVIPLYIPHCKKCKFCLSPLTNFCEK 115          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.170e-30
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC-----GKVRG 527
            MST G+VI CKAAV W+ NK   IE+V+VAPP+A EVRIK++ T +C +D +  +G     L P ILGHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++N C     GK +G
Sbjct:    1 MSTAGKVIKCKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPL-PVILGHEAAGIVESIGEGVTTVKPGDKVIPLFTPQCGKCRICKHPESNFCLINDLGKPKG 122          

HSP 2 Score: 25.409 bits (54), Expect = 1.170e-30
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            F+  G PIH F+GTST
Sbjct:  131 FTCKGKPIHHFIGTST 146          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.524e-30
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 512
            MST G+VI C+AAV WE NK   IE+V+V PP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLC 112          

HSP 2 Score: 26.5646 bits (57), Expect = 1.524e-30
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 1
Query:  553 MTARALFSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPL 684
            M   + F+  G PIH FLG +T + +  +   S+ T  D  +PL
Sbjct:  125 MDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISV-TKIDAASPL 167          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.981e-30
Identity = 64/128 (50.00%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  189 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVQMNDRQSPF 572
            QVITC AAVAW   + LV+E+V+V+PPQ  E+RIK++ T+LC +D   W   + + L P I GHEAAGIVES+GEGVTE + GDHV+  +  EC  C+ C SGK+N+C +V G    G+  +D+++ F
Sbjct:   12 QVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAW---ESQSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMC-QVLGMERKGLMHSDQKTRF 135          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.382e-30
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK--VRGATGAGVQMNDR 560
            M T G+ ITCKAAVAWEP+K L +E + VAPP+A EVRIKIL + +C +D+       P   FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K  +   TG    M  R
Sbjct:    1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSR 130          

HSP 2 Score: 25.7942 bits (55), Expect = 4.382e-30
Identity = 16/46 (34.78%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  553 MTARALFSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPLRT 690
            MT+R  F+  G PI+  +GTST T +  +   +++   DP  PL +
Sbjct:  127 MTSR--FTCRGKPIYNLVGTSTFTEYTVVADIAVA-KIDPKAPLES 169          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 4.413e-30
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WEP+K   IED++VAPP+A EVRIK++ T +C +D +  S      L P +LGHE AGIVESVGEGVT V+PGD VIP +  +C +C+ CK  + NLC K
Sbjct:    1 MSTAGKVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMK 114          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 5.704e-30
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE NK   +E+V+VAPP+A EVRIKI+ T +C +D +  +G      FP ILGHEAAG++ESVGE VT ++PGD VIP +  +C EC+ C S K NLC K
Sbjct:    1 MSTVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIK 114          

HSP 2 Score: 24.2534 bits (51), Expect = 5.704e-30
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPL 684
            F+  G  IH F+GTST T +  +  T+ +   D   PL
Sbjct:  132 FTCKGKAIHHFVGTSTFTEYTVVHETA-AAKIDSAAPL 168          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 5.704e-30
Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++ T +C +D +  SG     L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K
Sbjct:    1 MSTAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK 114          

HSP 2 Score: 26.5646 bits (57), Expect = 5.704e-30
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTSTSTPHPPLCRTSLSTNKDPPTPL 684
            F+  G PIH FLGTST + +  +   S++   D  +PL
Sbjct:  131 FTCRGKPIHHFLGTSTFSQYTVVDEISVA-KIDAASPL 167          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 9.671e-30
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE +K   IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVESVGEGVT V+PGD VIP +  +C EC+ CK  ++N C +
Sbjct:    1 MSTAGKVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPL-PAVLGHEGAGIVESVGEGVTCVKPGDKVIPLFSPQCGECRICKHPESNFCSR 114          

HSP 2 Score: 21.1718 bits (43), Expect = 9.671e-30
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            FS  G  IH F+ TST
Sbjct:  131 FSCKGKQIHNFISTST 146          
BLAST of DY260292 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 9.671e-30
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  174 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGK 518
            MST G+VI CKAAV WE  K   IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLK 114          

HSP 2 Score: 23.483 bits (49), Expect = 9.671e-30
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  571 FSKNGTPIHPFLGTST 618
            F+ +G PIH F+G ST
Sbjct:  131 FTCSGKPIHHFVGVST 146          
The following BLAST results are available for this feature:
BLAST of DY260292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ADHP_RABIT1.161e-3056.52Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH1_RABIT1.170e-3053.66Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1_GEOKN1.524e-3055.75Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADHL6_ARATH1.981e-3050.00Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH8_RANPE4.382e-3051.15NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH1_PERMA4.413e-3056.52Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1_CHICK5.704e-3056.52Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1E_HORSE5.704e-3055.65Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1_MOUSE9.671e-3055.65Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1G_HUMAN9.671e-3056.52Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260292 ID=DY260292; Name=DY260292; organism=Citrus clementina; type=EST; length=1116bp
GGTGTGTTTGGTAGAATCAATAATAGAGGGAGCTACTTTAGAAAAATCTC
ACATCTGTTGCCGGCAGCCACTCTCAGACCGTGTCACGTCCCTTTTTAAT
AATAATATCTATCTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCAT
TCTCATTTTCATTGTCAGCAGCCATGTCTACTGAAGGTCAAGTCATCACA
TGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTGAGGA
TGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCT
TCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGATCCT
GAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGGCTGCTGGGATTGTGGA
GAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCAGGTGATCATGTCATCC
CTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCCGGAAAG
ACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGCGCCGGTGTCCAGAT
GAATGACCGCCAGAGCCCTTTTCTCCAAAAATGGGACACCCATCCATCCC
TTCCTGGGAACCTCAACCTCTACCCCCCACCCCCCCCTTTGCAGGACGTC
ACTGTCCACAAACAAAGACCCACCCACGCCCCTTCGAACAAAATAAGCCC
TCCCTTCCTGCAGGCGGCCCCACCCCTCTCATGAAGACACCGCGAACACC
CAACAAAAACAAACACCCGGACCCAACAACTCCGCAACAATATGCCCCAA
GGAACCGCTCCCCCCGATTCCAGGGCGCACACGGTCCCTAACAGACGATC
CTACACCCCCCACCCGATAATACGGCCAATCCTACCAGTCACCCCACAAT
CCCCTCTCGCCCGCACACCTCACAGCACCTCTCACCCACCCTACCACCCC
TCCTCACATCGCCCCCCAACACAGATACTACCCACCTCTCTCCCACACAG
TCCTGCCTACTGGCCCCACACCCCCAGAACCGCCCCCAGCGACCACCCAT
CTCACCTCTGGCGAACATACACCCCCTCACCCTTCACGTAAACTCACCCC
AACTCTATCCCAACCC
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