DY260295

Overview
NameDY260295
Unique NameDY260295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1210
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.135e-41
Identity = 91/191 (47.64%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAF 775
            + ++AH+DHGK+TL+D+L+A AG+I+ E+AGD R  D  + E  RGITI +  +S+ +              +GNEYLINLID+PGHVDF  +VT A+R  DGA+VVV  +EG+  QTETVLRQAL E +RPVL +NK+DR   EL +D  E  + F K+I NAN +I     +      QV    G+VAF
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISAELAGDQRFLDFDEQEQARGITIDAANVSMVHSY------------EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVCAVEGIMPQTETVLRQALKENVRPVLFINKVDRLINELKLDASELQERFVKIIANANKLIKNMAPEEFRDKWQVRVEDGSVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.211e-41
Identity = 92/204 (45.10%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPL 811
            +++IAH+DHGK+TL+D+L+A AG+I++++AG     D+ ++E ERGITI S  +S+ +E  D             EYLINLID+PGHVDF  +VT A+R  DGA+VV+D +EG   QTETVLRQAL E +RPVL +NK+DR   EL VD +E      K+I++ N +I G  E+      +V   +G VAF    + W   +P+
Sbjct:   24 IAIIAHIDHGKTTLSDNLLAGAGMISKDLAGRQLFMDSDEEEQERGITIDSANVSMVHEFED------------EEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALKEHVRPVLFINKVDRLINELQVDAQEMQIRLGKLIDHVNKLIKGMNEERYNQGWRVDAAEGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.112e-41
Identity = 91/204 (44.61%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPL 811
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+  +E ERGITI S+ +S+ +E             +G EYLINLID+PGHVDF  +VT A+R  DGA+VV+D +EG   QTETVLRQAL E ++PVL +NK+DR   EL VD +E      K+I++ N +I G  E+      +V   +G VAF    + W   +P+
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISKELAGRQLFMDSDAEEQERGITIDSSNVSMVHEY------------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALKEHVKPVLFINKVDRLINELQVDDQEMQIRLGKLIDHVNKLIKGMNEERYNAGWRVDAAEGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.059e-40
Identity = 92/191 (48.17%), Postives = 121/191 (63.35%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAF 775
            + ++AH+DHGK+TL+D+L+AAAG+I+ E+AGD R  D  + E ERGITI +  +S+ +   D            NEYLINLID+PGHVDF  +VT A+R  DGA+VVV  +EGV  QTETVLRQAL E +RPVL +NK+DR   EL +D  E    F K+I   N +I     +    + QV    G VAF
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAAAGMISSELAGDQRFLDFDEQEQERGITIDAANVSMVHSYED------------NEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVCAVEGVMPQTETVLRQALKENVRPVLFINKVDRLINELKLDDAELQNRFVKIIAGVNKLIKNMAPEQYKTEWQVKIEDGTVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULSO (Elongation factor 2 OS=Sulfolobus solfataricus GN=fusA PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLNVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIY (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIN (Elongation factor 2 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIM (Elongation factor 2 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIL (Elongation factor 2 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIK (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
The following BLAST results are available for this feature:
BLAST of DY260295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_METTH2.135e-4147.64Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_METMT6.211e-4145.10Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_METBU8.112e-4144.61Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_METST1.059e-4048.17Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_SULSO1.384e-4045.55Elongation factor 2 OS=Sulfolobus solfataricus GN=... [more]
EF2_SULIY1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIN1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIM1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIL1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIK1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YB03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260295 ID=DY260295; Name=DY260295; organism=Citrus clementina; type=EST; length=1210bp
CACACACGCTATATATACGCAGCTACGTTGTAAAGTTCACTCCTTTCTCT
CTATTTTTACGGATTGAGACATTTGCAGTCTCTCTCGCTCGCCGCCTTTG
AAAGAAATACTGTTGTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTG
AAGTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCAAACATAACAT
CCGCAATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCCGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGGCACCTATGAAGATCCCCTCCTTGGCGATGGTCAGGTTTA
CCCTGGAAAGGGGAACGTTGCCTTCCCCTGCGGGTTTGCCTGGGTGGGCC
TTTTACCCTTGACAATTTTGGCTAAAAAGTATGCCTCCCAAGTTTCGGAA
TTTGAGGAAGTCAAAAATAAAGGAAGAGGCCCGGGGGGTGAAAAACTTCT
TTGACCCCGGCTACAAAGGAAGTGGGACCCCCCCGGAAACCCCGGGCTCC
CCCCTCTGGCAAGCCGGGGTTTGGTCCCCATTTTGGCCCTTGAACCCCCC
CAAGCAAAAAACTCCAACTTTTGGCTGGGAGGGGAAAGAGAAAAAAAAAA
GAGCCTTGGGGGCCCAATGTTTACAAAAACCTTTTGGGGTTCCCCCATTA
AAATCCCGGAAAAAAAGAAGGAGATTTTAAAGGGGGGGGAAGGGCGCTCT
TGAGGAAAAACCCCCGGGTTAACGCGCGAAACCCCGCGCCCTCCCCCCCC
CCCCCAAACA
back to top