DY260295

Overview
NameDY260295
Unique NameDY260295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1210
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_SULIA (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.27) GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.384e-40
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            + +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL +  +E       +I   N ++  Y +P   +   + P  GNV F
Sbjct:   23 IGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIF 201          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.083e-40
Identity = 89/191 (46.60%), Postives = 125/191 (65.45%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAF 775
            + ++AH+DHGK+TL+D+L+A AGII++E+AG     D+  +E  RGITI ++ +S+ +E+            +G +YLIN+ID+PGHVDF  +VT A+R  DGA+V+VD +EG   QTETVLRQAL E++RPVL +NK+DR   EL VD  E      KVI+  N +I G  ED      ++   KG VAF
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGIISEELAGKQLFMDSDAEEQARGITIDASNVSMVHEV------------EGQDYLINMIDTPGHVDFGGDVTRAMRAVDGAVVLVDAVEGTMPQTETVLRQALKEQVRPVLFINKVDRLVNELKVDETEMQIRLGKVIDKVNKLIKGMNEDLYNNGWKLDASKGTVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.969e-40
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGDG-QVYPGKGNVAF 775
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+ ++E  RGITI ++ +S+ +               G EYLIN+ID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL +NK+DR   EL VD +E      KVI+  N ++    + +  DG ++   KG VAF
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISEELAGRQLFMDSDEEEQARGITIDASNVSMVHTYG------------GEEYLINMIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALKEGVRPVLFINKVDRLVNELKVDEQEMQIRLAKVIDKVNKLIKGMNEKMYNDGWKLDAAKGTVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.969e-40
Identity = 97/234 (41.45%), Postives = 144/234 (61.54%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTY-EDPLLGDGQVY-PGKGNVAF-PCGFAWVGLLPLTILAKKYASQVSEFEEVKNKGRGPGGEKL 898
            + +IAHVDHGK+T +D+L+A AGI++ ++AG+ R  D    E +RGIT+K+  +SLY+E             +G  Y+INLID+PGHVDFS +VT +LR+ DGA++VVD +EGV  QTETVLRQAL E +RP+L +NK+DR   EL +  +E  Q   ++I++ N  + T+  DP +    +  P KG+VA       W   +P   +A++   + S+  E   KG     E+L
Sbjct:   23 IGIIAHVDHGKTTTSDALLAHAGILSPKLAGEARALDYLDVEQQRGITVKAANVSLYHEY------------KGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAILVVDAVEGVMTQTETVLRQALEELVRPLLFINKVDRLIKELKLSPQEIQQRIVQIIKDVNERILTFAPDPEIAKKWLLDPAKGHVALGSAKDKWGITIP---MAQEKGIKFSDIVEAYAKGSKDAIEEL 241          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.530e-39
Identity = 93/224 (41.52%), Postives = 131/224 (58.48%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTY-EDPLLGDGQVYPGKGNVAFPCGFAWVGLLPLTILAKKYASQVSEFEEVKNKG 874
            M + AH+DHGK+TL+D+L+A AG+I++E+AG   + D  + E  RGITI +  +S+ +              +G +YLINLID+PGHVDF  +VT A+R  DGA++VVD +EGV  QTETVLRQAL E ++PVL +NK+DR   EL +   E  Q F K+I + N ++  Y  +       V    G+VAF  G A+          KK      +  E+ NKG
Sbjct:   24 MGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVSMVHNY------------EGQDYLINLIDTPGHVDFGGDVTRAMRAIDGAIIVVDAVEGVMPQTETVLRQALREYVKPVLFINKVDRLIKELKLGPNEILQRFAKIITDVNRLIKRYAPEEFKSQWMVKVEDGSVAF--GSAYYNWALSVPFMKKTGVSFKDIVELTNKG 233          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METBF (Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=fusA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.530e-39
Identity = 90/204 (44.12%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGDG-QVYPGKGNVAFPCG-FAWVGLLPL 811
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+ ++E ERGITI S+ +S+ +   +             +YLINLID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL VNK+DR   EL VD +E      KVI++ N ++         +G +V    G VAF    + W   +P+
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISKELAGRQLFMDSDEEEQERGITIDSSNVSMVHNFDN------------EDYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALREHVRPVLFVNKVDRLINELKVDSQEMQIRLGKVIDHVNKLIKNMNPEKYKEGWRVDAAAGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.998e-39
Identity = 97/226 (42.92%), Postives = 136/226 (60.18%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPLTILAKKYASQVSEFEEVKNKGR 877
            + ++AH+DHGK+TL+D+L++ AG+I++E+AG     D+  +E  RGITI ++ +S+ +E             +G EYLIN+ID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E++ PVL +NK+DR   EL VD  E      KVI+  N +I G  ED      ++   KG VAF    + W    P   + K   S    F++V NK R
Sbjct:   24 IGIVAHIDHGKTTLSDNLLSGAGMISEELAGRQLFMDSDAEEQARGITIDASNVSMVHEY------------EGQEYLINMIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALKEQVVPVLFINKVDRLINELKVDEMEMQVRLAKVIDKVNKLIKGMNEDMYNNGWKLDAAKGTVAFGSALYNWAVSAP--FMQKSGVS----FKDVYNKCR 231          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.998e-39
Identity = 83/200 (41.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:  176 VLWTSNITSAMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGDGQVYPGKGNVAF 775
            ++W       + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D  + E ERGITI +  +S+ +E             +G +YLINLID+PGHVDF  +VT A+R  DG +VVVD +EGV  QTETVLRQAL E ++PVL VNK+DR   EL +  ++  +   KVI   N ++         + ++    G+ AF
Sbjct:   13 LMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY------------EGQDYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDAVEGVMPQTETVLRQALKENVKPVLFVNKVDRLIKELELTPQQMQERLIKVITEVNKLIKAMRPDKYSEWKIDVANGSAAF 200          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.408e-39
Identity = 87/191 (45.55%), Postives = 123/191 (64.40%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGD-GQVYPGKGNVAF 775
            M + AH+DHGK+TL+D+L+A AG+I++E+AG   + D  + E  RGITI +  +S+ +              +GN+YLINLID+PGHVDF  +VT A+R  DGA++VVD +EGV  QTETVLRQAL E ++PVL +NK+DR   EL +  ++  + F KVI + N ++  Y  P   D   V    G+VAF
Sbjct:   24 MGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVSMVHNY------------EGNDYLINLIDTPGHVDFGGDVTRAMRAIDGAIIVVDAVEGVMPQTETVLRQALREYVKPVLFINKVDRLIKELKLTPQQMQERFVKVITDVNRLIRRYAPPEFKDKWLVKVEDGSVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 7.593e-39
Identity = 93/223 (41.70%), Postives = 133/223 (59.64%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTY-EDPLLGDGQVYPGKGNVAFPCGF-AWVGLLPLTILAKKYASQVSEFEEVKN 868
            + ++AH+DHGK+TL+D+L+A AG++++E+AG   + D  + E  RGITI            +AA+ S     QG EYLINLID+PGHVDF  +VT A+R  DG +VVVD +EGV  QTETV+RQAL E ++PVL +NK+DR   EL ++ +E  + F K+I + N ++  Y       + QV    G VAF   +  W   +P     K     + E+  VKN
Sbjct:   24 IGIVAHIDHGKTTLSDNLIAGAGMMSEELAGKQLVLDYDEQEQARGITI------------NAAVASMVHTFQGKEYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDSVEGVMPQTETVIRQALREHVKPVLFINKIDRLINELRLNSDEMQKRFTKIITDVNRLISKYAPQQFTKEWQVSVQDGRVAFGSAYNNWAISIPAMAETKITFKDIVEY--VKN 232          
The following BLAST results are available for this feature:
BLAST of DY260295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_SULIA1.384e-4045.55Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_METB63.083e-4046.60Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_METMJ8.969e-4045.55Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_IGNH48.969e-4041.45Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_THEGJ1.530e-3941.52Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_METBF1.530e-3944.12Elongation factor 2 OS=Methanosarcina barkeri (str... [more]
EF2_METPE1.998e-3942.92Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_ARCFU1.998e-3941.50Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_PYRKO3.408e-3945.55Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_THEAC7.593e-3941.70Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260295 ID=DY260295; Name=DY260295; organism=Citrus clementina; type=EST; length=1210bp
CACACACGCTATATATACGCAGCTACGTTGTAAAGTTCACTCCTTTCTCT
CTATTTTTACGGATTGAGACATTTGCAGTCTCTCTCGCTCGCCGCCTTTG
AAAGAAATACTGTTGTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTG
AAGTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCAAACATAACAT
CCGCAATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCCGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGGCACCTATGAAGATCCCCTCCTTGGCGATGGTCAGGTTTA
CCCTGGAAAGGGGAACGTTGCCTTCCCCTGCGGGTTTGCCTGGGTGGGCC
TTTTACCCTTGACAATTTTGGCTAAAAAGTATGCCTCCCAAGTTTCGGAA
TTTGAGGAAGTCAAAAATAAAGGAAGAGGCCCGGGGGGTGAAAAACTTCT
TTGACCCCGGCTACAAAGGAAGTGGGACCCCCCCGGAAACCCCGGGCTCC
CCCCTCTGGCAAGCCGGGGTTTGGTCCCCATTTTGGCCCTTGAACCCCCC
CAAGCAAAAAACTCCAACTTTTGGCTGGGAGGGGAAAGAGAAAAAAAAAA
GAGCCTTGGGGGCCCAATGTTTACAAAAACCTTTTGGGGTTCCCCCATTA
AAATCCCGGAAAAAAAGAAGGAGATTTTAAAGGGGGGGGAAGGGCGCTCT
TGAGGAAAAACCCCCGGGTTAACGCGCGAAACCCCGCGCCCTCCCCCCCC
CCCCCAAACA
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