DY260295

Overview
NameDY260295
Unique NameDY260295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1210
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.593e-39
Identity = 84/191 (43.98%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLG-DGQVYPGKGNVAF 775
            + + AH+DHGK+TL+D+L+A AG++++++AG   + D  + E  RGITI +   S+ +E+             G EYLINLID+PGHVDF  +VT A+R  DG ++VVD +EGV  QTETV+RQAL E+++PVL +NK+DR   EL ++ EE  + F K+I + N ++  Y  P      QV    G VAF
Sbjct:   24 IDIAAHIDHGKTTLSDNLIAGAGMMSEDLAGKQLLLDYDEQEQARGITINAANASMVHEV------------DGKEYLINLIDTPGHVDFGGDVTRAMRAVDGTIIVVDSVEGVMPQTETVVRQALKEKVKPVLFINKVDRLINELKLNAEEMQKRFVKIITDVNRLITKYAPPEFSKQWQVNVQAGTVAF 202          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.593e-39
Identity = 89/204 (43.63%), Postives = 127/204 (62.25%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPL 811
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+ ++E ERGITI ++ +S+ +   +             +YLINLID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL VNK+DR   EL VD +E      KVI++ N +I     +      +V    G VAF    + W   +P+
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISKELAGRQLFMDSDEEEQERGITIDASNVSMVHTYNN------------EDYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDHVNKLIKNMNPEKFKAGWKVDAAAGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METAC (Elongation factor 2 OS=Methanosarcina acetivorans GN=fusA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.295e-38
Identity = 91/204 (44.61%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPL 811
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+ ++E  RGITI S+ +S+ +        +F  E    +YLINLID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL VNK+DR   EL VD +E      KVI++ N +I     +      +V    G VAF    + W   +P+
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISKELAGKQLFMDSDEEEQARGITIDSSNVSMVH--------TFDNE----DYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQIRLGKVIDHVNKLIKNMNPEKFKAGWKVDAAAGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.691e-38
Identity = 93/223 (41.70%), Postives = 133/223 (59.64%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTY-EDPLLGDGQVYPGKGNVAFPCGF-AWVGLLPLTILAKKYASQVSEFEEVKN 868
            + ++AH+DHGK+TL+D+L+A AG++++E+AG   + D  + E  RGITI            +AA+ S     QG EYLINLID+PGHVDF  +VT A+R  DG +VVVD +EGV  QTETV+RQAL E ++PVL +NK+DR   EL ++ +E  + F K+I + N ++  Y       + QV    G VAF   +  W   +P     K     + E+  VKN
Sbjct:   24 IGIVAHIDHGKTTLSDNLIAGAGMMSEELAGKQLVLDYDEQEQARGITI------------NAAVASMVHAFQGKEYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDSVEGVMPQTETVIRQALREYVKPVLFINKIDRLINELRLNSDEMQKRFTKIISDVNKLISKYAPKEFTKEWQVSVQDGKVAFGSAYNNWAISVPSMAETKITFKDIVEY--VKN 232          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.691e-38
Identity = 91/224 (40.62%), Postives = 135/224 (60.27%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCGF-AWVGLLPLTILAKKYASQVSEFEEVKNK 871
            + + AH+DHGK+TL+D+L+A AG+I++++AGD    D  ++EAERGITI +  +S+ +E             QG  +LINLID+PGHVDF  +VT A+R  DGA+VVV  +EG+  QTETVLRQAL E+++P+L +NK+DR   EL +  EE    F K+I + N +I     +   G   V    G+VAF   +  W   +P     K     + ++ E +N+
Sbjct:   24 IGICAHIDHGKTTLSDNLLAGAGMISKDLAGDQLALDFDEEEAERGITIYAANVSMVHEC------------QGKPHLINLIDTPGHVDFGGDVTRAMRAIDGAVVVVCAVEGIMPQTETVLRQALKEKVKPILFINKVDRLLNELKLTPEELQNRFMKIIADVNKLIEKMSPEEFKGKWVVNVMDGSVAFGSAYHNWAISVPYMQKTKITFKDIIDYCEAENQ 235          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.209e-38
Identity = 82/165 (49.70%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN 700
            + + AH+DHGK+TL+D+L+A AG+I++E+AG+    D  ++EA+RGITI +  +S+ +              +GNEYLINLID+PGHVDF  +VT A+R  DGA+VVV  +EGV  QTETVLRQAL ER++PVL +NK+DR   EL +  EE    F K+I + N
Sbjct:   24 IGICAHIDHGKTTLSDNLLAGAGMISKELAGEQLALDFDEEEAQRGITIFAANVSMVHTY------------EGNEYLINLIDTPGHVDFGGDVTRAMRAIDGAIVVVCAVEGVMPQTETVLRQALRERVKPVLFINKVDRLINELKLTPEELQSRFIKIINDIN 176          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.885e-38
Identity = 90/204 (44.12%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENAN-VIMGTYEDPLLGDGQVYPGKGNVAFPCG-FAWVGLLPL 811
            + ++AH+DHGK+TL+D+L+A AG+I++E+AG     D+ ++E  RGITI ++ +S+ +        +F  E    +YLINLID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL VNK+DR   EL VD +E      KVI++ N +I     +      +V    G VAF    + W   +P+
Sbjct:   24 IGIVAHIDHGKTTLSDNLLAGAGMISKELAGRQLFMDSDEEEQARGITIDASNVSMVH--------TFDNE----DYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDHVNKLIKNMNPEKFKAGWKVDAAAGTVAFGSALYNWAISVPM 215          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 3.768e-38
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMG--TYEDPLLGDGQVYPGKGNVAF 775
            +++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT +DE ERGITI +  +S+ +E             +G+++LINLID+PGHVDF  +VT A+R  DGALVVVD +EG   QTETV+RQAL E ++P L +NK+DR   EL    EE  +    VI + N ++   T E   + D  V    G VAF
Sbjct:   24 IAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVVRQALREGVKPTLFINKVDRLISELQEGPEEMQERLLSVIGDVNELIRGMTEEKDDIEDWTVSVEDGTVAF 203          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.768e-38
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMG--TYEDPLLGDGQVYPGKGNVAF 775
            +++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT +DE ERGITI +  +S+ +E             +G+++LINLID+PGHVDF  +VT A+R  DGALVVVD +EG   QTETV+RQAL E ++P L +NK+DR   EL    EE  +    VI + N ++   T E   + D  V    G VAF
Sbjct:   24 IAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVVRQALREGVKPTLFINKVDRLISELQEGPEEMQERLLSVIGDVNELIRGMTEEKDDIEDWTVSVEDGTVAF 203          
BLAST of DY260295 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.768e-38
Identity = 85/191 (44.50%), Postives = 119/191 (62.30%), Query Frame = 2
Query:  206 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELPVDGEEAYQTFQKVIENANVIMGTYEDPLLGDGQVY-PGKGNVAF 775
            + + AHVDHGK+TL+D+L++AAG+I++++AG     D    E +R +T+K+   SLY+E             +G  YLINLID+PGHVDF S+   ALR+ DGA+VVVD +EGV  QTE  LR AL ER+RPVL +NK+DR   EL +   E  Q   +++ + N ++ TY D       +  P KG VAF
Sbjct:   23 IGITAHVDHGKTTLSDTLLSAAGLISEKIAGQALALDYLDVEQKRQMTVKAANASLYHEY------------KGKPYLINLIDTPGHVDFQSKTIRALRVIDGAIVVVDAVEGVMTQTEMYLRVALEERVRPVLFINKIDRLIKELRLSPTEIQQRLVQIVRDVNTLIATYADKEFQKAWLLDPMKGQVAF 201          
The following BLAST results are available for this feature:
BLAST of DY260295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_PICTO7.593e-3943.98Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_METTE7.593e-3943.63Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_METAC1.295e-3844.61Elongation factor 2 OS=Methanosarcina acetivorans ... [more]
EF2_THEVO1.691e-3841.70Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_META31.691e-3840.63Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_METJA2.209e-3849.70Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_METMA2.885e-3844.12Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_HALSA3.768e-3845.83Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS33.768e-3845.83Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_DESK13.768e-3844.50Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260295 ID=DY260295; Name=DY260295; organism=Citrus clementina; type=EST; length=1210bp
CACACACGCTATATATACGCAGCTACGTTGTAAAGTTCACTCCTTTCTCT
CTATTTTTACGGATTGAGACATTTGCAGTCTCTCTCGCTCGCCGCCTTTG
AAAGAAATACTGTTGTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTG
AAGTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCAAACATAACAT
CCGCAATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCCGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGGCACCTATGAAGATCCCCTCCTTGGCGATGGTCAGGTTTA
CCCTGGAAAGGGGAACGTTGCCTTCCCCTGCGGGTTTGCCTGGGTGGGCC
TTTTACCCTTGACAATTTTGGCTAAAAAGTATGCCTCCCAAGTTTCGGAA
TTTGAGGAAGTCAAAAATAAAGGAAGAGGCCCGGGGGGTGAAAAACTTCT
TTGACCCCGGCTACAAAGGAAGTGGGACCCCCCCGGAAACCCCGGGCTCC
CCCCTCTGGCAAGCCGGGGTTTGGTCCCCATTTTGGCCCTTGAACCCCCC
CAAGCAAAAAACTCCAACTTTTGGCTGGGAGGGGAAAGAGAAAAAAAAAA
GAGCCTTGGGGGCCCAATGTTTACAAAAACCTTTTGGGGTTCCCCCATTA
AAATCCCGGAAAAAAAGAAGGAGATTTTAAAGGGGGGGGAAGGGCGCTCT
TGAGGAAAAACCCCCGGGTTAACGCGCGAAACCCCGCGCCCTCCCCCCCC
CCCCCAAACA
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