DY260298

Overview
NameDY260298
Unique NameDY260298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1474 contig Ccv1_Contig1474:1..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.200e-41
Identity = 79/151 (52.32%), Postives = 115/151 (76.16%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T +CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:   81 FTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 8.362e-41
Identity = 79/151 (52.32%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T TCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:   81 FTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.092e-40
Identity = 77/151 (50.99%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T +CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:   81 FTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.177e-40
Identity = 77/151 (50.99%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T +CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:   81 FTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.430e-32
Identity = 71/158 (44.94%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    4 VWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 462
            +WT TCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +E    +PWF+L+  +FLF WWD L     EKG     +D K++  L+
Sbjct:   96 MWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.432e-32
Identity = 71/143 (49.65%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    4 VWTTTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLEK 414
            +WT TCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV  E+LKE+      G      +PWF+L+ ++F+FKWW   DH  K
Sbjct:   81 LWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.338e-30
Identity = 70/155 (45.16%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    7 WTTTCCSHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVID-MKTIHK 456
            WT T CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++E+L +L +  D G+  +K++PWFRL+  N L  WW++L    L  +++   TIH+
Sbjct:   88 WTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL--NNLKPLVEPTNTIHR 238          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.296e-29
Identity = 62/151 (41.06%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T +C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW R + + FL++WW HL+  T    +++  IH++
Sbjct:   81 FTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.296e-25
Identity = 63/162 (38.89%), Postives = 97/162 (59.88%), Query Frame = 1
Query:    4 VWTTTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +WT TCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       +   K +PWF+++ +N+LF WW+ L+   L+EV + + IH++
Sbjct:  133 LWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD--DLSEVENDRQIHRM 287          
The following BLAST results are available for this feature:
BLAST of DY260298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI1_MESAU2.200e-4152.32Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_BOVIN8.362e-4152.32Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MOUSE1.092e-4050.99Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT3.177e-4050.99Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_PHARH1.430e-3244.94Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI1_SCHPO5.432e-3249.65Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI_DICDI1.338e-3045.16Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI2_HUMAN3.296e-2941.06Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_YEAST1.296e-2538.89Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260298 ID=DY260298; Name=DY260298; organism=Citrus clementina; type=EST; length=1242bp
CTTGTGTGGACTACCACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGA
GCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCCCAAAGAAAGC
TTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTC
ACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGG
GGAGCATGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTA
ACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGTCAACCGGGAACAG
TTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCT
GTCTCCTTGGTTCAGACTGGTTGTGGACAATTTCTTGTTCAAGTGGTGGG
ATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGACATGAAGACCATT
CACAAGTTGACTTAATAAAGCCGCAGGCCCTTGAAACACAGTATTTGTGT
GCCGGAACCTGTATTCCAATAAGTTTGGGCATTTGAGAGTTCTTCCAGAC
ATTAAGGGTACCCCGTATCTTCTCACCGGTTTCTTTATTCCAATAAATTT
GGATATGCAAGAGTTCTACCCCGATTAGCATTTTGTTGGTGACGTTACCC
TATCTTTTTTCCGATGTGCTGCCTTTATGGAATTTCATTGATAAGTTTGC
CATTTTGACCCTTCCCAATGGTTTAATCCAACACAAAACAATCCTGCTTC
CTCCTTTCACCAAAAACAAACCACCCAACACCCCCCACCTTCCTTCACCC
AACTGCTCCCCCAAAAAACCCTCCCTCCCCATCTCTTCCACACCACCCGC
CCCCTCTCCGCCCTTCTAAAACACCCCTTTTCTCCCCCTCCCCCCATCCC
TCCCCAGTGGGCCTGCCCTCTTCCCCCCTCCCCCTTTTCCCAGCCCCTAT
TCCCGCGCACCCCTCTCCGGCACTCATAACTGTGTTTTATCTCTCACAAA
CCACTCTCACCCCCTCCTCTCCTCACCAACATCCGCCCCCACCCCTCACC
CGACCACCCTCCCCGCCCCTTCTCACCAACGCCCCACCCGCCTCACCCCC
ATACTAGCCCCACCCCATCCCCCTCTCCCCCCGCCCTTCTACCGCCCCCG
CCGCCCAACCGGAACCCCAACGCCCCTGCAGCACCCCTCATACCGCCTCC
CACCCGCCCACCTCACCCACTACCACCGCCCCATCCTTCCCC
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