DY260300

Overview
NameDY260300
Unique NameDY260300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260300_ssr741 microsatellite DY260300_ssr741:741..752. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1475 contig Ccv1_Contig1475:1..983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC67_ORYSJ (NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.716e-41
Identity = 88/176 (50.00%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  136 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLKKR-----GAKSEDEE 639
            L LPPGFRFHPTDEELV  YL  +      P  II E+D+ + DPWDLP       +E YFF+ R+ KYPNG+R NRA  SGYWKATG DK +      +  G+KK LVFY GKPP G +T+WIMHEYRL     A      A   A+  D+WVLCR++ KK       ++ E+EE
Sbjct:   15 LNLPPGFRFHPTDEELVAHYLCPRAAGRAAPVPIIAELDLYRHDPWDLPHRALFGRREWYFFTPRDRKYPNGSRPNRAAASGYWKATGADKPVL--HNGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRLAKKGGAAAA---AGAGALRLDDWVLCRLYNKKNEWEKMQSRKEEEE 185          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.141e-39
Identity = 77/159 (48.43%), Postives = 107/159 (67.30%), Query Frame = 1
Query:  142 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLK 609
            +PPGFRFHPTDEEL+  YL +K+       + I +VD+ KS+PW+LP       +E YFF+ R+ KYP G R+NRAT +GYWKATG D++I +S+   ++GMKKTLVFY+G+ P G ++ W+MHEYRL        K ++    + A D WVLC++ LK
Sbjct:   20 MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRL------DGKFSYHYISSSAKDEWVLCKVCLK 172          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.141e-39
Identity = 82/165 (49.70%), Postives = 105/165 (63.64%), Query Frame = 1
Query:  142 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLKKRGAKS 627
            LPPGFRFHPTDEEL+  YL  KIF   L    I EVD+ + +PW+LP       +E YF+S R+ KYP G R+NRAT +GYWKATG DK++ +  G Q+VGMKKTLVFY+G+ P G +T W+MHEYRL         +N         + WV+CR+F K    K+
Sbjct:   22 LPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGLKTKWVMHEYRL---------ENDHSHRHTCKEEWVICRVFNKTGDRKN 177          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-39
Identity = 84/170 (49.41%), Postives = 109/170 (64.12%), Query Frame = 1
Query:  142 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIF----LKKRGAKSE 630
            LPPGFRFHPTDEEL+  YL RK+      +  I EVD+ K +PW LPG      +E YFFS R+ KYP G R+NRAT +GYWKATG D++I +S+   +VGMKKTLVFY+G+ P G +++W+MHEYRL        K ++      + D WV+ R+F    L   GA SE
Sbjct:   17 LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRL------EGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSE 180          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NA102_ARATH (NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-39
Identity = 84/162 (51.85%), Postives = 107/162 (66.05%), Query Frame = 1
Query:  136 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLKK 612
            L LP GFRFHPTDEELV  YL R+  + P+   +I E+D+ K +PW+LP       +E YFFS R+ KYPNG+R NRA G+GYWKATG DK I   +    +G+KK LVFY GK P G +T+WIMHEYRL   AN  +  +  +   +  D+WVLCRI+ KK
Sbjct:   48 LNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPK---TLGIKKALVFYAGKAPKGIKTNWIMHEYRL---ANVDRSASTNKKNNLRLDDWVLCRIYNKK 203          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC12_ARATH (NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.662e-39
Identity = 82/186 (44.09%), Postives = 118/186 (63.44%), Query Frame = 1
Query:  109 KINFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP-----GDVAQ-ERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQT-----PAVATDNWVLCRIFLKKRGAKSED 633
            K+N   NG  ++PPGFRFHPT+EEL+  YL++K+ +  +   +I EVD+ K +PWD+      G   Q + YFFS ++ KYP G R+NRAT +G+WKATG DK I +    + +G++KTLVFY+G+ PHG ++DWIMHEYRL    + P    +A        +   + WV+CR+F KK   K +D
Sbjct:    5 KVNLSINGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSC--VRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL---DDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKIDD 185          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC43_ARATH (NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.261e-38
Identity = 81/182 (44.51%), Postives = 118/182 (64.84%), Query Frame = 1
Query:  100 LMEKINFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP-----GDVAQ-ERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAV-----ATDNWVLCRIFLKK 612
            + + ++   NG  ++PPGFRFHPT+EEL+  YL++K+ +  +   +I +VD+ K +PWD+      G   Q + YFFS ++ KYP G R+NRAT +G+WKATG DK I  S G +I GM+KTLVFY+G+ PHG ++DWIMHEYRL     +P+     +  ++       + WV+CRIF KK
Sbjct:    2 MSKSMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK-IIYSNGRRI-GMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKK 181          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC76_ORYSJ (NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 2.152e-38
Identity = 81/167 (48.50%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  130 GVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPG------DVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLKK 612
            G L +PPGFRFHPTDEEL+  YL++K+    +   +I E+D+ K +PWDL            E YFFS ++ KYP G R+NRAT +G+WKATG DK I  +   +I GM+KTLVFY G+ PHG +TDWIMHEYRL                 V  D WV+CR+F+KK
Sbjct:    6 GALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRI-GMRKTLVFYVGRAPHGKKTDWIMHEYRL-----------DQDNVDVQEDGWVVCRVFMKK 160          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.152e-38
Identity = 82/183 (44.81%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  112 INFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP-----GDVAQ-ERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRL----VTAANAPQKKNFAQTPAVATD-NWVLCRIFLKKRGAKS 627
            +N   NG  ++PPGFRFHPT+EEL+  YL++KI    +   +IP++D+ K +PWD+      G   Q + YF+S ++ KYP G R+NRAT  G+WKATG DK I T+ G++I GM+KTLVFY+G+ PHG ++DWIMHEYRL    + ++      N      + +D  WV+CR+F K    K+
Sbjct:    1 MNISVNGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTN-GDRI-GMRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKNNLCKN 181          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.068e-37
Identity = 80/186 (43.01%), Postives = 114/186 (61.29%), Query Frame = 1
Query:  112 INFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQI--------------ATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLKKRG 618
            +   ++G L LPPGFRFHPTD E+++ YL +K+      +  I EVD+ K +PWDLP       +E YFFS ++ KYP G R+NRAT  GYWKATG D++I              ++++  Q+VGMKKTLVFY G+ P G++T+W+MHE+RL    +A    +         D WV+C++F KK+G
Sbjct:    9 VKLEQDGGLFLPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL----HANLHNHHPNLRLNPKDEWVVCKVFHKKQG 190          
The following BLAST results are available for this feature:
BLAST of DY260300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC67_ORYSJ2.716e-4150.00NAC domain-containing protein 67 OS=Oryza sativa s... [more]
NAC54_ARATH1.141e-3948.43Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thal... [more]
NAC31_ARATH1.141e-3949.70Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC98_ARATH2.542e-3949.41Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thal... [more]
NA102_ARATH2.542e-3951.85NAC domain-containing protein 102 OS=Arabidopsis t... [more]
NAC12_ARATH5.662e-3944.09NAC domain-containing protein 12 OS=Arabidopsis th... [more]
NAC43_ARATH1.261e-3844.51NAC domain-containing protein 43 OS=Arabidopsis th... [more]
NAC76_ORYSJ2.152e-3848.50NAC domain-containing protein 76 OS=Oryza sativa s... [more]
NAC66_ARATH2.152e-3844.81NAC domain-containing protein 66 OS=Arabidopsis th... [more]
NAC77_ORYSJ1.068e-3743.01NAC domain-containing protein 77 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260300 ID=DY260300; Name=DY260300; organism=Citrus clementina; type=EST; length=983bp
CCTCAGTCTTTCACTATATTTGATGGGTTTTTAACAAAGTTTGCTCTGAG
CTGAGTTTTGGGCTTTGCAAAGACTTTTCGGTTACAGTGAAGATTAAGAT
TAATGGAGAAGATCAATTTTATGAAGAATGGTGTGCTGAGACTGCCTCCG
GGATTCCGGTTTCATCCTACGGACGAAGAACTTGTTGTTCAGTACTTGAA
GCGCAAGATTTTTGCCTGCCCCTTGCCCGCTTCCATAATTCCAGAAGTTG
ATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATGTGGCGCAAGAG
AGGTATTTTTTCAGCACAAGGGAAGCTAAGTACCCAAACGGGAACAGATC
GAACAGGGCCACGGGGTCTGGTTATTGGAAGGCAACTGGGCTTGACAAGC
AAATTGCGACTTCCAGGGGCAACCAAATCGTGGGAATGAAAAAAACTCTC
GTTTTTTATAGAGGCAAGCCACCACACGGCTCTAGGACTGATTGGATCAT
GCATGAATACCGCCTTGTTACTGCTGCCAATGCCCCTCAAAAGAAAAACT
TTGCCCAGACCCCAGCTGTGGCAACGGACAATTGGGTTCTATGCCGCATC
TTTTTGAAGAAAAGAGGAGCCAAGAGTGAGGATGAGGAAACGTGCACCGA
AATTGGAAGAACCAGGGCTAACGGGCCCAACCCGTTTTTTATGATTTTAT
GAGAAAGGAAGAAAGGGCTGACTTGAACCTTGTTCCACCTTCCTCCTCCT
CCGGCCCAGTGGAATCACTGAAGTTTCCTTCAAATGAATCAGACGATCCT
GAAAAAAGTAGTTGCCAATACTTCCCCTTCTTTAAAAAAAAAACGCAATA
AACCTTTTTCATAAATTTCCCCCTCTTTAATTTATGGTTCCGAACAGTAA
TTGGGCGTTTCCGAATAAAAAAAATCAAAAAACCCCCTTTTCCCCCCCTC
CCCACGTAATCCCAAAGTTTGGGCCCTTTGAAC
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