DY260300

Overview
NameDY260300
Unique NameDY260300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260300_ssr741 microsatellite DY260300_ssr741:741..752. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1475 contig Ccv1_Contig1475:1..983. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.023e-20
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  142 LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLP--------GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAAN 531
            L  GFRF+PT+ EL+  YL+ ++        S+IP +DV   +P  LP        GD A++  FF  R+ +   G R +R TGSGYWKATG    +  S  N+++G+KKT+VFY GK P G +T W M+EY+ V  A+
Sbjct:    5 LSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGD-AEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVF-SPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKAVETAS 141          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.984e-19
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  145 PPGFRFHPTDEELVVQYLKRKIFACPLPA--SIIPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGN-QIVGMKKTLVFYRGKPPHGSRTDWIMHEY 510
            P GFRF PTD E+V  YL+ K           +I  VD+C  DPWDLP     +      YFF  +E KY  G+R  R T SG+WK TG+   I    G+ + +G K+ LVF   K   GS++DW MHEY
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY 130          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.094e-17
Identity = 57/134 (42.54%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  136 LRLPPGFRFHPTDEELVVQYL--KRKIFACPLPASIIPEVDVCKSDPWDLP-------GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEY 510
            +  P G RF PTDEE+VV YL  K            I  V VC+ DPW+LP        DVA    FF  +E KY  G++  R T SG+WK+TG  K I   R  Q +G KK L+FY  K    S++DW++HEY
Sbjct:    1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAW--CFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPI--MRNRQQIGEKKILMFYTSKE---SKSDWVIHEY 127          
BLAST of DY260300 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.830e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  151 GFRFHPTDEELVVQYLKRKIFACPLP--ASIIPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG------NQIVGMKKTLVFYRGKPPHGSRTDWIMHEY 510
            GF F P DEELV  YL+ KI           I EV++C  DPW+L      +      YFFS RE     GNR +R T SG WK TG   ++    G         +G K+ LVF  G+ P  +++DW++HE+
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEF 136          
The following BLAST results are available for this feature:
BLAST of DY260300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC61_ARATH2.023e-2041.73Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC5_ARATH4.984e-1942.31NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC3_ARATH2.094e-1742.54NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC1_ARATH2.830e-1437.59NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260300 ID=DY260300; Name=DY260300; organism=Citrus clementina; type=EST; length=983bp
CCTCAGTCTTTCACTATATTTGATGGGTTTTTAACAAAGTTTGCTCTGAG
CTGAGTTTTGGGCTTTGCAAAGACTTTTCGGTTACAGTGAAGATTAAGAT
TAATGGAGAAGATCAATTTTATGAAGAATGGTGTGCTGAGACTGCCTCCG
GGATTCCGGTTTCATCCTACGGACGAAGAACTTGTTGTTCAGTACTTGAA
GCGCAAGATTTTTGCCTGCCCCTTGCCCGCTTCCATAATTCCAGAAGTTG
ATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATGTGGCGCAAGAG
AGGTATTTTTTCAGCACAAGGGAAGCTAAGTACCCAAACGGGAACAGATC
GAACAGGGCCACGGGGTCTGGTTATTGGAAGGCAACTGGGCTTGACAAGC
AAATTGCGACTTCCAGGGGCAACCAAATCGTGGGAATGAAAAAAACTCTC
GTTTTTTATAGAGGCAAGCCACCACACGGCTCTAGGACTGATTGGATCAT
GCATGAATACCGCCTTGTTACTGCTGCCAATGCCCCTCAAAAGAAAAACT
TTGCCCAGACCCCAGCTGTGGCAACGGACAATTGGGTTCTATGCCGCATC
TTTTTGAAGAAAAGAGGAGCCAAGAGTGAGGATGAGGAAACGTGCACCGA
AATTGGAAGAACCAGGGCTAACGGGCCCAACCCGTTTTTTATGATTTTAT
GAGAAAGGAAGAAAGGGCTGACTTGAACCTTGTTCCACCTTCCTCCTCCT
CCGGCCCAGTGGAATCACTGAAGTTTCCTTCAAATGAATCAGACGATCCT
GAAAAAAGTAGTTGCCAATACTTCCCCTTCTTTAAAAAAAAAACGCAATA
AACCTTTTTCATAAATTTCCCCCTCTTTAATTTATGGTTCCGAACAGTAA
TTGGGCGTTTCCGAATAAAAAAAATCAAAAAACCCCCTTTTCCCCCCCTC
CCCACGTAATCCCAAAGTTTGGGCCCTTTGAAC
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