DY260301

Overview
NameDY260301
Unique NameDY260301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260301_ssr56 microsatellite DY260301_ssr56:56..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9435 contig Ccv1_Contig9435:33..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL1_ARATH (Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 8.512e-62
Identity = 116/240 (48.33%), Postives = 164/240 (68.33%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGN----NQNS*LPPVPRAPAEKKISWF 816
            ++V ++ E+L++ L  Y A++S    KE G+F +VLSGGSLI  + KL+EPPY   ++WAKW+VFW DERVV K+HDDSNYKLA D  LSKV +   ++ +IND +SAE AA +YE  ++ + +S  +A S  +  P+FDL+LLGMG DGH+ASLFP HP L+  + WVTF+ DS KPPPERITFT PVI+S+A + +V  G  K++A+  A+ +    + +  LP     P+   + WF
Sbjct:   13 IRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKLIEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSKVNVFPRHICSINDTVSAEEAATEYEFAIRQMVRSRTVAASDNSDSPRFDLILLGMGSDGHVASLFPNHPALEVKDDWVTFLTDSHKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSLPARLVHPSNGNLIWF 252          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL1_ORYSJ (Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. japonica GN=Os03g0416500 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 6.100e-60
Identity = 113/240 (47.08%), Postives = 159/240 (66.25%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGN-NQNS*LPPVPR---APAEKKISWF 816
            +++F+S +++A  LA+Y + +S    KE+G F + LSGG LI  +RKL E PY  +++W+KW++FW DER V K+H DS YK   + FLSKVPI  G+VY+IND ++ E AA DYE  ++ L K   +  S +   PKFDL+LL +G DGH+ASLFP HP L+  + WVT+I DSP PPPERITFT PVI+S++ IA+V  G  K+ AV  A+ +  +    P +P     P + K+ WF
Sbjct:   34 IRMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSIPARMVQPTDGKLVWF 273          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL1_ORYSI (Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. indica GN=OsI_011697 PE=3 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 6.100e-60
Identity = 113/240 (47.08%), Postives = 159/240 (66.25%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNN-QNS*LPPVPR---APAEKKISWF 816
            +++F+S +++A  LA+Y + +S    KE+G F + LSGG LI  +RKL E PY  +++W+KW++FW DER V K+H DS YK   + FLSKVPI  G+VY+IND ++ E AA DYE  ++ L K   +  S +   PKFDL+LL +G DGH+ASLFP HP L+  + WVT+I DSP PPPERITFT PVI+S++ IA+V  G  K+ AV  A+ +  +    P +P     P + K+ WF
Sbjct:   34 IRMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGAEGPDAPSIPARMVQPTDGKLVWF 273          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_RAT (6-phosphogluconolactonase OS=Rattus norvegicus GN=Pgls PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.545e-39
Identity = 95/239 (39.75%), Postives = 134/239 (56.07%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAK-FGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDS--IEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQNS*LPPVPRAPAEKKISWF 816
            + VF S ++L  SLA+  A  +A      +G F + LSGGSL+  L + +      +    +A+W + + DER+VP DH +S Y L     LSK+PI    V  I+ AL  E AAEDY   L+   + + +        P FDL++LG+GPDGH  SLFPGHPLL+E EK V  I DSPKPPP+R+T T PV++++  +  V  G GK++ +   L  +Q S LP     P    + WF
Sbjct:    9 ISVFSSPQELGASLAQLVAQRAASCLEGNRGRFALGLSGGSLVSMLARDLPAATAPAGPASFARWTLGFCDERLVPFDHAESTYGLYRTHLLSKLPIPDSQVLTIDPALPVEDAAEDYARKLRQAFQGDTV--------PVFDLLILGVGPDGHTCSLFPGHPLLQEREKIVAPIGDSPKPPPQRVTLTLPVLNAAQSVIFVATGEGKAAVLKRIL-EDQESALPAAMVQPRTGALCWF 238          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_MOUSE (6-phosphogluconolactonase OS=Mus musculus GN=Pgls PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.936e-39
Identity = 94/239 (39.33%), Postives = 134/239 (56.07%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAK-FGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDS--IEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQNS*LPPVPRAPAEKKISWF 816
            + VF S ++L  SLA+  A  +A     ++G F + LSGGSL+  L + +      +    +A+W + + DER+VP DH +S Y L     LSK+PI    V  IN AL  E AAEDY   L+   + + +        P FDL++LG+GPDGH  SLFP HPLL+E EK V  I DSPKPPP+R+T T PV++++  I  V  G GK++ +   L + + + LP     P    + WF
Sbjct:    9 ISVFSSPQELGASLAQLVAQRAASCLEGDRGRFALGLSGGSLVSMLARDLPAAAAPAGPASFARWTLGFCDERLVPFDHAESTYGLYRTHLLSKLPIPDSQVLTINPALPVEDAAEDYARKLRQALQGDAV--------PVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAAQSIIFVATGEGKAAVLKRILEDKEGT-LPAALVQPRTGALCWF 238          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_BOVIN (6-phosphogluconolactonase OS=Bos taurus GN=PGLS PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.013e-38
Identity = 93/239 (38.91%), Postives = 135/239 (56.49%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGS-FTVVLSGGSLIDSLRKLVEPPYVDS--IEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQNS*LPPVPRAPAEKKISWF 816
            + VF S ++L  SLA+     +A    + G+ FT+ LSGGSL+  L + +      +     A+W + + DER+VP +H +S Y L     LSK+PI    V  IN AL  E AAEDY   L+   + + +        P FDL++LG+GPDGH  SLFP HPLL+E EK V  I DSPKPPP+R+T T PV++++  +  V  G GK++ +   L + + + LP     P+  K+ WF
Sbjct:    9 ISVFSSPQELGASLAQLVVQQAACCLADAGARFTLGLSGGSLVSMLARELPAAAAPAGPASLARWTLGFCDERLVPFEHAESTYGLYRTHLLSKLPIFDSQVITINPALPVEEAAEDYAKKLRQAFQGDSI--------PVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIYVATGEGKAAILKRILEDKEENPLPAALVQPSAGKLCWF 239          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_HUMAN (6-phosphogluconolactonase OS=Homo sapiens GN=PGLS PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 8.572e-38
Identity = 93/241 (38.59%), Postives = 133/241 (55.19%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAK-FGKEKGSFTVVLSGGSLIDSLRK----LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQNS*LPPVPRAPAEKKISWF 816
            + VF S ++L  +LA+  A  +A      +  F + LSGGSL+  L +     V P    S+  A+W + + DER+VP DH +S Y L     LS++PI    V  IN  L  E AAEDY   L+   + + +        P FDL++LG+GPDGH  SLFP HPLL+E EK V  I DSPKPPP+R+T T PV++++  +  V  G GK++ +   L + + + LP     P   K+ WF
Sbjct:    9 ISVFSSSQELGAALAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPAAVAPAGPASL--ARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLPIPESQVITINPELPVEEAAEDYAKKLRQAFQGDSI--------PVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIFVATGEGKAAVLKRILEDQEENPLPAALVQPHTGKLCWF 239          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_SCHPO (Probable 6-phosphogluconolactonase OS=Schizosaccharomyces pombe GN=SPCC16C4.10 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.084e-32
Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLA-------YDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTAL 747
            V  F     +A +L  +  + S    K  G FT+ LSGGSL   L + +       IE++KW VF+ DER+VP D ++SNY L        ++GF  K   T        + +  +  A++YE  L H     + A S+    P FDL+LLG GPDGH  SLFP H +L+E+  WV  + DSPKPP +RIT T PV+  +  IA V  GAGK   +P  +
Sbjct:    3 VYSFSDVSLVAKALGAFVKEKSEASIKRHGVFTLALSGGSLPKVLAEGLAQQR--GIEFSKWEVFFADERIVPLDDENSNYALCKKLIFDKFEGFDPKKIHTINPELLKENPIDPQNVADEYEKQLVH-----VFANSSTVKVPVFDLLLLGCGPDGHTCSLFPDHEVLQEDVAWVAPVTDSPKPPKDRITLTLPVVTHAQAIAFVTTGAGKKDILPIVI 215          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_MYCTU (6-phosphogluconolactonase OS=Mycobacterium tuberculosis GN=pgl PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.261e-30
Identity = 81/216 (37.50%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATG--FPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALG 750
            +++F   + L  +  K            +G   +VL+GG    +L + +       IEW+K H+FW DER VP+D D+ N K A    L+ V I +  V+ +  A S      D +     L    +LA SAA G   P FD+ LLGMGP+GHI SLFP  P + E+ + V  + DSPKPPP RIT T P I  S  + ++V G GK+ AV  A+G
Sbjct:    5 IEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQ-AQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPM--AASDGDFGGDLDAAA--LAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIG 215          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_MYCBO (6-phosphogluconolactonase OS=Mycobacterium bovis GN=pgl PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.261e-30
Identity = 81/216 (37.50%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  109 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATG--FPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALG 750
            +++F   + L  +  K            +G   +VL+GG    +L + +       IEW+K H+FW DER VP+D D+ N K A    L+ V I +  V+ +  A S      D +     L    +LA SAA G   P FD+ LLGMGP+GHI SLFP  P + E+ + V  + DSPKPPP RIT T P I  S  + ++V G GK+ AV  A+G
Sbjct:    5 IEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQ-AQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPM--AASDGDFGGDLDAAA--LAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIG 215          
The following BLAST results are available for this feature:
BLAST of DY260301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
6PGL1_ARATH8.512e-6248.33Probable 6-phosphogluconolactonase 1 OS=Arabidopsi... [more]
6PGL1_ORYSJ6.100e-6047.08Probable 6-phosphogluconolactonase 1 OS=Oryza sati... [more]
6PGL1_ORYSI6.100e-6047.08Probable 6-phosphogluconolactonase 1 OS=Oryza sati... [more]
6PGL_RAT4.545e-3939.756-phosphogluconolactonase OS=Rattus norvegicus GN=... [more]
6PGL_MOUSE5.936e-3939.336-phosphogluconolactonase OS=Mus musculus GN=Pgls ... [more]
6PGL_BOVIN1.013e-3838.916-phosphogluconolactonase OS=Bos taurus GN=PGLS PE... [more]
6PGL_HUMAN8.572e-3838.596-phosphogluconolactonase OS=Homo sapiens GN=PGLS ... [more]
6PGL_SCHPO1.084e-3238.18Probable 6-phosphogluconolactonase OS=Schizosaccha... [more]
6PGL_MYCTU2.261e-3037.506-phosphogluconolactonase OS=Mycobacterium tubercu... [more]
6PGL_MYCBO2.261e-3037.506-phosphogluconolactonase OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260301 ID=DY260301; Name=DY260301; organism=Citrus clementina; type=EST; length=1227bp
TTTCCAAACATTTCCCTTAATCGGAACAAATCATCGGACTGCGTGAGAAT
CAAGGCATCATCATCATCATCATCAATGGCTGCCGAGAATAAGAACAAGA
ACAAGAACGTACAGGTTTTTGACTCAGAGGAAGATCTGGCTGTGTCTTTG
GCCAAATACACCGCCGATCTATCTGCCAAGTTCGGTAAAGAGAAGGGCTC
CTTCACTGTCGTCTTATCCGGTGGTTCTCTCATCGACTCCCTCAGGAAAT
TAGTGGAACCCCCGTATGTAGATTCAATTGAATGGGCGAAATGGCATGTG
TTTTGGGTTGATGAAAGAGTTGTTCCCAAGGATCATGATGATAGCAATTA
TAAGCTTGCTTATGATGGTTTCCTTTCTAAGGTACCAATTACCACTGGCA
ATGTCTATGCCATCAATGATGCATTATCTGCTGAAGGTGCAGCTGAAGAT
TATGAGACTTGTCTCAAGCATTTGACAAAGAGCAATATATTAGCTACATC
TGCTGCTACTGGTTTTCCAAAGTTTGATCTCATGCTTCTGGGTATGGGTC
CAGATGGACATATAGCTTCTCTGTTTCCAGGGCATCCTCTTCTCAAGGAG
AATGAAAAATGGGTTACTTTCATTAAAGACTCGCCCAAGCCACCTCCCGA
GAGAATCACTTTCACCTTCCCCGTAATCCACTCATCTGCATATATTGCAA
TGGTGGTGTGTGGTGCCGGAAAATCAAGTGCCGTTCCAACTGCCTTGGGT
AATAATCAAAACTCCTGATTGCCGCCAGTTCCAAGGGCACCCGCCGAAAA
AAAAATTTCCTGGTTTCCCTGACAAACCCCCACTTCCAAGCCTTAAAAAT
CCGGAACATTAACCTGTGCCGCGAACCCCTGTTACCCGCCCAGAAAAATG
GGTTTAACCCGCCGCGGTTTAACACCCCACAACGCTGGGATTTTGTTCCA
CATGAAAAAAAAAACTTCACCCTTGTAACGCCCCTCCAAAAACCTCCGAA
AAAACACATCCCTCTTGATCTCTTTAAAACAAAACAACAACAAGAAACCC
CCCCCTCTCTCTCGTCCTCACGCCTTGGCCGCTCATAACAAAATACACCT
CCGTTCCATCACCTTTCCTTTCGCCACGCAACACGCGGCTCCCCACACCC
ATAGCCCACATAAAAACACCCTCCCACTACCACTCCGCCCCACCCCCCCC
CCCCCGGCTCTCCCCCCCCTCAGCCTC
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