DY260301

Overview
NameDY260301
Unique NameDY260301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1227
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260301_ssr56 microsatellite DY260301_ssr56:56..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9435 contig Ccv1_Contig9435:33..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_BORBU (6-phosphogluconolactonase OS=Borrelia burgdorferi GN=pgl PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.186e-12
Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 1
Query:  187 KEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVP----ITTGNVYA-INDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQN 762
            K+K +   +  G S+++ L   ++     +  + + H F VDER VP + ++SNY L    F SK+     I+    +A +   +    A  DY   ++  ++ NI           FD +++ +G DGHIASLFP   LL  + +   +  +SPK P +RI+ T   +  S  + ++  G  K  A+   L +N +
Sbjct:   26 KDKYTSIGICGGRSIVNFLSVFLK----QNFSFRRSHFFLVDERCVPLNDENSNYNLLNKNFFSKMVDKNLISISKFHAFVYSEIDEATAIHDYN--IEFNSRFNI-----------FDFIIVSVGEDGHIASLFPSRKLLFSDVEGYQYEYNSPKFPSKRISLTPKSLFGSKAVVLLFMGVDKKCALENFLASNSS 205          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLPN (6-phosphogluconolactonase OS=Chlamydia pneumoniae GN=pgl PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.055e-11
Identity = 55/179 (30.73%), Postives = 85/179 (47.49%), Query Frame = 1
Query:  187 KEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGK 723
            K++G+F V LSGG     + K +       I+ +K  +FW DER+ P    +SNY  A    L  + I    ++ + +  + +GA +  E     L ++ I   S       FD+++LG+G DGH  SLF     L+E    V F    P    ER+T TFP +H   ++ + V G  K
Sbjct:   39 KQRGAFYVALSGGKTPLEIYKDIVINKDKLIDPSKIFLFWGDERLAPITSSESNYGQAMS-ILRDLNIPDEQIFRM-ETENPDGAKKYQE-----LIENKIPDAS-------FDMIMLGLGEDGHTLSLFSNTSALEEENDLVVF-NSVPHLETERMTLTFPCVHKGKHVVVYVQGENK 202          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_HAEIN (6-phosphogluconolactonase OS=Haemophilus influenzae GN=pgl PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.351e-11
Identity = 52/174 (29.89%), Postives = 78/174 (44.83%), Query Frame = 1
Query:  208 VVLSGGSLIDSLRK-LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKS 726
            + LSGGS    L K L + PY + I W   H +W D+R+VP    +SNY          + I   N++ I          + +E  L  +  + +           FD ++LGMG DGH ASLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G  K+
Sbjct:   32 ISLSGGSTPKLLFKTLAKSPYAEQINWKNLHFWWGDDRMVPPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFEEELSAVIPNGV-----------FDWIILGMGIDGHTASLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGESKA 192          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLTR (6-phosphogluconolactonase OS=Chlamydia trachomatis GN=pgl PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.351e-11
Identity = 57/203 (28.08%), Postives = 91/203 (44.83%), Query Frame = 1
Query:  115 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGK 723
            + DS+E+            + K   ++G+F V LSGG     + + +        + +K  VFW DER        SNY  A D  L  + I    ++ + D    +G  E YE  ++      I           FD+++LG+G DGH  SLFP    L+E E++V F  + P+    R+T TFP++  + ++   V G  K
Sbjct:   15 IADSQEEFLQIACYDWISTANKAIHKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKAMD-ILKGLRIPEDQIFRM-DTADPKGD-EAYEALIQKYVPDAI-----------FDMVMLGVGEDGHTLSLFPETHALEEKERFVVF-NEVPQLHTRRMTLTFPIVRQARHLVAYVQGENK 202          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_AGGAC (6-phosphogluconolactonase OS=Aggregatibacter actinomycetemcomitans GN=pgl PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.839e-11
Identity = 50/174 (28.74%), Postives = 77/174 (44.25%), Query Frame = 1
Query:  208 VVLSGGSLIDSLRK-LVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKS 726
            + LSGGS    L K L + PY + I W   H +W D+R+V     +SNY          + I   N++ I          + ++  L  +    +           FD ++LGMG DGH +SLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G GK+
Sbjct:   32 ISLSGGSTPKLLFKTLAQSPYAEQINWRNLHFWWGDDRMVSPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFQAELSAVISDGV-----------FDWIILGMGADGHTSSLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGEGKA 192          
BLAST of DY260301 vs. ExPASy Swiss-Prot
Match: 6PGL_HELPY (6-phosphogluconolactonase OS=Helicobacter pylori GN=pgl PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.932e-11
Identity = 54/197 (27.41%), Postives = 86/197 (43.65%), Query Frame = 1
Query:  187 KEKGSFTVVLSGG-SLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVIHSSAYIAMVVCGAGKSSAVPTALGNNQNS*LP 774
            K+    ++  SGG S I  L+KL     V +++W +  +  VDER++   HDDSN KL +D  L    +    +  + + +S++               +N L   A   F +  L +LGMG DGH ASLFP        EK    +      P ER++ +   + +   + + + G  K   +  AL  N    LP
Sbjct:   31 KKHHQISIAFSGGRSPISLLQKLS----VLNLKWHECLISLVDERIIDTSHDDSNTKLLHDYLLQNNALKASFIPLLPEKISSD---------------TNALFNFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSISGVEKRGVLEKALKENAPYSLP 208          
The following BLAST results are available for this feature:
BLAST of DY260301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
6PGL_BORBU6.186e-1227.416-phosphogluconolactonase OS=Borrelia burgdorferi ... [more]
6PGL_CHLPN1.055e-1130.736-phosphogluconolactonase OS=Chlamydia pneumoniae ... [more]
6PGL_HAEIN2.351e-1129.896-phosphogluconolactonase OS=Haemophilus influenza... [more]
6PGL_CHLTR2.351e-1128.086-phosphogluconolactonase OS=Chlamydia trachomatis... [more]
6PGL_AGGAC6.839e-1128.746-phosphogluconolactonase OS=Aggregatibacter actin... [more]
6PGL_HELPY8.932e-1127.416-phosphogluconolactonase OS=Helicobacter pylori G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260301 ID=DY260301; Name=DY260301; organism=Citrus clementina; type=EST; length=1227bp
TTTCCAAACATTTCCCTTAATCGGAACAAATCATCGGACTGCGTGAGAAT
CAAGGCATCATCATCATCATCATCAATGGCTGCCGAGAATAAGAACAAGA
ACAAGAACGTACAGGTTTTTGACTCAGAGGAAGATCTGGCTGTGTCTTTG
GCCAAATACACCGCCGATCTATCTGCCAAGTTCGGTAAAGAGAAGGGCTC
CTTCACTGTCGTCTTATCCGGTGGTTCTCTCATCGACTCCCTCAGGAAAT
TAGTGGAACCCCCGTATGTAGATTCAATTGAATGGGCGAAATGGCATGTG
TTTTGGGTTGATGAAAGAGTTGTTCCCAAGGATCATGATGATAGCAATTA
TAAGCTTGCTTATGATGGTTTCCTTTCTAAGGTACCAATTACCACTGGCA
ATGTCTATGCCATCAATGATGCATTATCTGCTGAAGGTGCAGCTGAAGAT
TATGAGACTTGTCTCAAGCATTTGACAAAGAGCAATATATTAGCTACATC
TGCTGCTACTGGTTTTCCAAAGTTTGATCTCATGCTTCTGGGTATGGGTC
CAGATGGACATATAGCTTCTCTGTTTCCAGGGCATCCTCTTCTCAAGGAG
AATGAAAAATGGGTTACTTTCATTAAAGACTCGCCCAAGCCACCTCCCGA
GAGAATCACTTTCACCTTCCCCGTAATCCACTCATCTGCATATATTGCAA
TGGTGGTGTGTGGTGCCGGAAAATCAAGTGCCGTTCCAACTGCCTTGGGT
AATAATCAAAACTCCTGATTGCCGCCAGTTCCAAGGGCACCCGCCGAAAA
AAAAATTTCCTGGTTTCCCTGACAAACCCCCACTTCCAAGCCTTAAAAAT
CCGGAACATTAACCTGTGCCGCGAACCCCTGTTACCCGCCCAGAAAAATG
GGTTTAACCCGCCGCGGTTTAACACCCCACAACGCTGGGATTTTGTTCCA
CATGAAAAAAAAAACTTCACCCTTGTAACGCCCCTCCAAAAACCTCCGAA
AAAACACATCCCTCTTGATCTCTTTAAAACAAAACAACAACAAGAAACCC
CCCCCTCTCTCTCGTCCTCACGCCTTGGCCGCTCATAACAAAATACACCT
CCGTTCCATCACCTTTCCTTTCGCCACGCAACACGCGGCTCCCCACACCC
ATAGCCCACATAAAAACACCCTCCCACTACCACTCCGCCCCACCCCCCCC
CCCCCGGCTCTCCCCCCCCTCAGCCTC
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