DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14854 contig Ccv1_Contig14854:497..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 9.842e-66
Identity = 127/201 (63.18%), Postives = 153/201 (76.12%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            I KDVTELIG+TP+VYLN V DGCV R  AKLE M+PCSSVKDRI YSMI DAE+KGLITPG +VLIE TSGNTGIGLAF+AA++GYKL + MP++ S+ERRIIL+A GAE+ L DP +G +G VKK EEI  +TPN YIL  FENPANP+I YETTGP+IW  + GK+D   S            G  L+++ PN+K+YG
Sbjct:    8 IAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKIDGLVSGIGTGGTITG-TGRYLREQNPNVKLYG 207          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 9.842e-66
Identity = 127/205 (61.95%), Postives = 157/205 (76.59%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I  DVT LIG+TP+VYLN VVDGC A+IAAKLE+M+PCSSVKDRI YSMI DAE+KGLITPGK+VLIE TSGNTGIGLAF+AA++GYKLI+ MP++ S+ERRIIL+A GAE+ L DP +G +G ++K +E+  + PN YIL  FENPANP+I YETTGP+IW  + GKVD   S            G  LK++ P IK+YG + T
Sbjct:    8 IASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIGTGGTVTG-TGKYLKEQNPEIKIYGVEPT 211          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 4.885e-65
Identity = 124/205 (60.49%), Postives = 155/205 (75.61%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I  +  +LIG TPMVYLNNVV GCVA +AAKLE+M+PC SVKDRI YSMI DAE+KGLITPGK+VL+E TSGNTGIGLAFIAAS+GYKLI+ MP++ S+ERR++LRA GAE+ L +PA G  G ++K EEIL +TPN Y+L  F+NPANP+I YETTGP+IW D+ GK+D   +            G  +K+R P +KV G + T
Sbjct:   75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGIGTGGTITGV-GRFIKERKPELKVIGVEPT 278          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 5.401e-64
Identity = 125/205 (60.98%), Postives = 155/205 (75.61%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I +DV++LIG TPMVYLNNV  G VA IAAKLE M+PC SVKDRI YSMI DAE KG+ITPGKT L+E TSGNTGIGLAFIAA+RGYK+ + MP++ S+ERR+IL+A GAE+ L DPA G +G V+K EEIL +TP+ Y+L  F+NPANP+I YETTGP+IW D+ GKVD F +        +   G  LK+R P ++V G + T
Sbjct:   67 IAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYETTGPEIWEDTKGKVDIFVAGIGTGGTISGV-GRYLKERNPGVQVIGIEPT 270          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 7.798e-63
Identity = 121/209 (57.89%), Postives = 155/209 (74.16%), Query Frame = 3
Query:  105 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            D   I  +V++LIG TPMVYLN++  GCVA IAAKLE+M+PC SVKDRI YSM+ DAE KG I+PGK+VL+E TSGNTGIGLAFIAASRGY+LI+ MP++ S+ERR++L+A GAE+ L DPA G  G V+K EEIL  TP+ Y+L  F+NPANP+I YETTGP+IW+D+ GKVD F +            G  +K++ P  +V G + T
Sbjct:  109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGV-GRFIKEKNPKTQVIGVEPT 316          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.783e-60
Identity = 104/172 (60.47%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            I +DVT+LIG TPMVYLN V DGC+A IAAKLE M+PC SVKDRI  SMI +AE+ G ITP KTVL+E T+GNTG+G+AF+AA++GYKLI+ MP++ +IERR++LRALGAE+ L +P  G +G V K +EI+ +T N Y+   F+N AN +I +ETTGP+IW D+ G VD F
Sbjct:   99 IAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTMPASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTANTKIHFETTGPEIWEDTMGNVDIF 270          

HSP 2 Score: 37.7354 bits (86), Expect = 2.783e-60
Identity = 18/46 (39.13%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  616 GRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNG 753
            G + +F+AGIGT GTVTG G    +   + ++ +G++P E +V++G
Sbjct:  265 GNVDIFVAGIGTGGTVTGTGGFL-KMMNKDIKVVGVEPSERSVISG 309          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.059e-43
Identity = 88/173 (50.87%), Postives = 122/173 (70.52%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNV--VDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            +I  ++TELIG TP+V LN +  ++GC A+I  KLE M P +SVKDRI  +MI  AE +GLI PGKT+LIE TSGNTGI LA +AA++GY+LI+ MP T S ERR +L+A GA++ L   + G  G +++ +E+    PN Y+L  F+NPANP+I  +TT  +IW D+ G +D
Sbjct:    2 KIASNITELIGRTPLVRLNRIPLLEGCGAKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGKTLLIEPTSGNTGIALAMVAAAKGYQLILTMPETMSQERRAMLKAYGAKLELTPGSEGMGGCIRRAQELAESLPNAYMLQQFDNPANPQIHQQTTALEIWQDTDGAID 174          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.884e-41
Identity = 88/174 (50.57%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            I +DVT+L+G+TP+V L  V +G +A + AKLE   P +SVKDRI  +MI  AE+ GLI P  TV++E TSGNTGI LA + A+RGY  ++ MP T SIERR++LRA GAE+ L   A G  G + K EE+       +I   FENPANP I   TT  ++W D+ GKVD F S
Sbjct:    3 IAEDVTQLVGNTPLVRLRRVTEGALADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKPD-TVILEPTSGNTGIALAMVCAARGYHCVLTMPETMSIERRMLLRAYGAELILTPGADGMSGAIAKAEELAKSDKRYFIPQQFENPANPAIHAATTAEEVWRDTDGKVDIFVS 175          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.096e-40
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            I +D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI P  T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L   A G  G + K EE+       ++   FENPANP I   TT  ++W D+ GKVD
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVD 171          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.096e-40
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            I +D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI P  T+++E TSGNTGI LA + A+RGY+ ++ MP T S+ERR++LRA GAE+ L   A G  G + K EE+       ++   FENPANP I   TT  ++W D+ GKVD
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVD 171          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_MAIZE9.842e-6663.18Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_ORYSJ9.842e-6661.95Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSKP_ARATH4.885e-6560.49Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL5.401e-6460.98Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH7.798e-6357.89Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK4_ARATH2.783e-6060.47Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_SYNY31.059e-4350.87Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCLE2.884e-4150.57Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_MYCTU1.096e-4050.00Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO1.096e-4050.00Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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