DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14854 contig Ccv1_Contig14854:497..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.431e-40
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            +I +D +  IGHTP+V LN + +G   RI AK+E   P  SVK RI  +MI DAE +G++ PG   L+E TSGNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A G +G ++K EEI+   P  Y +L  F NPANPEI  +TTGP+IW D+ G+VD F S
Sbjct:    3 KIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIS 174          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.431e-40
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            +I +D +  IGHTP+V LN + +G   RI AK+E   P  SVK RI  +MI DAE +G++ PG   L+E TSGNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A G +G ++K EEI+   P  Y +L  F NPANPEI  +TTGP+IW D+ G+VD F S
Sbjct:    3 KIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIS 174          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.441e-40
Identity = 92/201 (45.77%), Postives = 126/201 (62.69%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL-GPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            +I   +TELIG+TP+V LN + +G  A +A KLE   P SSVKDRIA +MI+ AE  G I    TV++E TSGNTG+GLA + A+RGYKL I MP + S ER+++LRA GAE+ L   A G  G + K + +++  P+ Y +   F+N ANPE+  +TT  +IW D+ GKVD F +            G+ LKK  P +KV
Sbjct:    2 KIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTAEEIWRDTDGKVDVFVAGVGTGGTITGV-GEVLKKYKPEVKV 200          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 91/174 (52.30%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            +I +D +  IGHTP+V LN + +G   RI AK+E   P  SVK RI  +MI DAE +G++ PG   L+E TSGNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A G +G ++K EEI+   P  Y +L  F NPANPEI  +TTGP+IW D+ G+VD F
Sbjct:    3 KIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVF 172          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 91/174 (52.30%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            +I +D +  IGHTP+V LN + +G   RI AK+E   P  SVK RI  +MI DAE +G++ PG   L+E TSGNTGI LA++AA+RGYKL + MP T SIERR +L+ALGA + L + A G +G ++K EEI+   P  Y +L  F NPANPEI  +TTGP+IW D+ G+VD F
Sbjct:    3 KIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG-VELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVF 172          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.566e-38
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKI 599
            +I K +TEL+G TP++ LN ++    A +  KLE   P SSVKDRIA SMI+ AE +GLI+PG  V+IE TSGNTGIGLA++ A++GY++II+MP T S+ERR I++A GAE+ L   A G +G + K E +       ++   F NPANP I  +TT  +I
Sbjct:    3 KIYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPGD-VIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETLAIEL-GAWMPMQFNNPANPSIHEKTTAQEI 162          

HSP 2 Score: 38.891 bits (89), Expect = 1.566e-38
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 1
Query:  631 FIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRTQGIGARVLPPVFDLPQPPQI 840
            F++G+GT GT++G   +  +  P+ + Y  ++  ESAVL+G+      + QGI A  +P   D     QI
Sbjct:  174 FVSGVGTGGTLSGVSHVLKKASPETVIY-AVEAEESAVLSGQEPGPH-KIQGISAGFIPNTLDTKAYDQI 241          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.657e-38
Identity = 85/176 (48.30%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            +I +D +  IG+TP+V LN + +G    I  K+E   P  SVK RI  +MI  AE    I      LIE TSGNTGI LA++AASR Y+L + MP T SIER+ IL++LGAE+ L D   G +G + K  +I++R P+ Y +L  FENPANPEI   TTGP+IWND+ G +D   S
Sbjct:    3 KIYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKN-VKLIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKYFLLKQFENPANPEIHQITTGPEIWNDTNGNLDILIS 174          

HSP 2 Score: 31.5722 bits (70), Expect = 2.657e-38
Identity = 23/75 (30.67%), Postives = 36/75 (48.00%), Query Frame = 1
Query:  616 GRLMLFIAGIGTRGTVTGAGE-IP*RKEPQILRYMGIKPPESAVLNGRTTWETL-----RTQGIGARVLPPVFDL 822
            G L + I+ +GT GT+TG    I   K  + L  + ++P ES V+      + +     + QGIG   +P   DL
Sbjct:  167 GNLDILISAVGTGGTITGITRYIKKIKRKKNLISIAVEPSESPVITQFLAGKAIEPGPHKIQGIGPGFIPKNLDL 241          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.090e-38
Identity = 86/172 (50.00%), Postives = 112/172 (65.12%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            D ++ IG TP+V LN +V G  A + AK+E   P  SVK RI  +MI DAE +GL+ PGK  LIE TSGNTGI LAF+AA+RG  L + MP T S+ERR +L A GA++ L +   G  G V++ E+I    P+ Y+ L  F NPANP I  +TTGP+IW D+GG +D   S
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRYVLLQQFRNPANPAIHEQTTGPEIWEDTGGAIDILVS 180          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.254e-36
Identity = 93/202 (46.04%), Postives = 128/202 (63.37%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL-GPFENPANPEIPYETTGPKIWNDSG-GKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVY 716
            +   +TELIG+TP+V LN + D   A +  KLE M P SSVKDRI  +MI+ AE +G +  G T+ IE TSGNTGIGLA +AA++G K I++MP T S+ERR +LRA GAE+ L   A G +G +KK EE+  +  +GY +   F NP+NPEI  +TTG +I    G  ++DAF +            G+ LK+  P+IK+Y
Sbjct:    4 VANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEK--HGYFVPQQFNNPSNPEIHRQTTGKEIVEQFGDDQLDAFVAGIGTGGTITGA-GEVLKEAYPSIKIY 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.404e-36
Identity = 79/168 (47.02%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  135 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            + IG+TP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG  VLIE TSGNTGI LA IAA +GY++ ++MP   S ERR  +RA GAE+ L     G EG      E+ NR   G +L  F NP NP   Y TTGP+IW  +GG++  F S
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR-GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVS 171          

HSP 2 Score: 39.2762 bits (90), Expect = 1.404e-36
Identity = 22/72 (30.56%), Postives = 39/72 (54.17%), Query Frame = 1
Query:  616 GRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRTQGI-GARVLPPVFDLPQ 828
            GR+  F++ +GT GT+TG      R++ + +  +G++P E + + G   W T    GI  A ++  V D+ Q
Sbjct:  164 GRITHFVSSMGTTGTITGVSRFM-REQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQ 234          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_SALTY1.431e-4052.27Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI1.431e-4052.27Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_NEIMB2.441e-4045.77Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_ECOLI3.188e-4052.30Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO573.188e-4052.30Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_STRP61.566e-3848.77Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_BUCAI2.657e-3848.30Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
SRPG_SYNE75.090e-3850.00Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_BACSU1.254e-3646.04Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSM_ECOLI1.404e-3647.02Cysteine synthase B OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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