DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.222e-36
Identity = 92/197 (46.70%), Postives = 124/197 (62.94%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWND-SGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            VT++IG+TP+V L NVVD   A I  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPEI   TTGP++     G ++DAF +        +   G  LKK  PN+++
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEIHELTTGPELVEQFEGRQIDAFLAGVGTGGTLSGV-GKVLKKEYPNVEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.222e-36
Identity = 92/197 (46.70%), Postives = 124/197 (62.94%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWND-SGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            VT++IG+TP+V L NVVD   A I  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPEI   TTGP++     G ++DAF +        +   G  LKK  PN+++
Sbjct:    9 VTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEIHELTTGPELVEQFEGRQIDAFLAGVGTGGTLSGV-GKVLKKEYPNVEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.126e-36
Identity = 91/198 (45.96%), Postives = 124/198 (62.63%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGK-VDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++T++IG TP+V L NVVD   A +  KLE   P  SVKDRIA +MI+ AE +G I PG T+ +E TSGNTGIGLAF+ A++GYK +  MP T S ERR +L+A GAE+ L   +   +G +KK +E+  +  +GY     FENPANPE+   TTGP++     GK +DAF +        +   G  LKK  PNI++
Sbjct:    8 NITQIIGGTPVVKLRNVVDDNAADVYVKLEYQNPGGSVKDRIALAMIEKAEREGKIKPGDTI-VEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKEL--KEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGV-GKVLKKEYPNIEI 201          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.002e-34
Identity = 83/176 (47.16%), Postives = 113/176 (64.20%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            +I +D +  IG+TP+V LNN+ +G    I AK+E   P  SVK RI  +MI DAE KG +     + IE TSGNTGI LA++AA+R Y L +IMP + SIERR +L++LGA + L +   G +G + K  EI++     Y +L  FENPANPEI  +TTGP+IW D+ G +D   S
Sbjct:    3 KIYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKNIEI-IEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPANPEIHQKTTGPEIWKDTKGNIDILIS 174          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.617e-34
Identity = 76/168 (45.24%), Postives = 98/168 (58.33%), Query Frame = 3
Query:  135 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            + IG+TP+V L  +     + I  KLE   P  SVKDR A SMI +AE +G I PG  VLIE TSGNTGI LA IAA +GY++ ++MP   S ERR  +RA GAE+ L     G EG  +     ++    G +L  F NP NP   Y TTGP+IW  + G++  F S
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG-ARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVS 171          

HSP 2 Score: 36.965 bits (84), Expect = 3.617e-34
Identity = 21/72 (29.17%), Postives = 38/72 (52.78%), Query Frame = 1
Query:  616 GRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRTQGI-GARVLPPVFDLPQ 828
            GR+  F++ +GT GT+TG      R++ + +  +G++P E + + G   W      GI  A ++  V D+ Q
Sbjct:  164 GRITHFVSSMGTTGTITGVSRFL-REQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQ 234          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_STAES6.222e-3646.70Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ6.222e-3646.70Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAAW8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC8.126e-3645.96Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_BUCAP2.002e-3447.16Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSM_SALTY3.617e-3445.24Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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