DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.297e-33
Identity = 86/197 (43.65%), Postives = 119/197 (60.41%), Query Frame = 3
Query:  123 KDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKV 713
            ++  E IG+TP+V +NN+ +     I  KLE   P  S+KDRIA +MI+DAE KGL+    T+ IE TSGNTGIGLA +AA +GYKLI++MP + SIERR I+ A GAE  L     G +G ++K  E+   TPN +I   F+NPAN +I  ETT  +I  D    +D   +      +       +LK++ PN+KV
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNKDSTI-IEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDNPANVKIHVETTAQEILQDFPEGLDYVITGVGTGGHITGI-AKALKEKYPNLKV 197          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.694e-33
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            I  D +  IG+TP+V L +   G    +  K+E   P  SVK RI  +M+  AE  G +T GK + ++ TSGNTGI LA++AA+RGYK+ + MP T S+ER+ +L  LG  + L + A G +G + K EEI+   P+ Y+ L  FENPANP+I  ETTGP+IW D+ GKVD
Sbjct:    3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVD 170          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.213e-33
Identity = 87/204 (42.65%), Postives = 120/204 (58.82%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKI---WNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVY 716
            +I  +  +LIG TP+V LN +     A++  KLE   P  SVKDR AY MI +AE  GL+ PG +V+IE TSGNTGIGLA  AA+RGYK I++MP T + ER  +L+A GAEV L        G +KK +E+  + PN YI   F+N ANP+   +TT P+I     + G  + AF +            G++LK+  P+I V+
Sbjct:    3 KIVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDNTANPDAHRKTTAPEIARAIEEIGKPLGAFVASSGTGGTITG-TGEALKELFPDITVH 204          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.462e-32
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            ++ + V+ELIG+TP+++L          + AK E + P  S+KDR A+ MIKDA D   I    T+ +E TSGNTGI LA I A  G K I +MP + S+ERR ++   GA + L    +G +G V K  EIL  TPN +++  FEN +N     + T  +I  D   ++D F
Sbjct:    2 KVHEKVSELIGNTPIIHLKKFG----INVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQDTTI-VEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELDIF 169          

HSP 2 Score: 41.2022 bits (95), Expect = 1.462e-32
Identity = 22/69 (31.88%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRTQGIGARVLPPVFD 819
            +  L +F+AG GT GT++G GEI  +++ + +  +G++P  S +L+ +    + + QGIGA  +P + +
Sbjct:  163 DNELDIFVAGFGTGGTISGVGEIL-KEKLEKVHIVGVEPLNSPLLS-KGEAGSHKIQGIGANFIPAILN 229          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.873e-32
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            +TE IG+TP++ L  + +   + I AK E   P  SVKDR A  ++KDAE++GL+ PG TV +E T+GNTGIGLA +  S+GYKL+I MP+T S  +  +LR LGAEVY   PAV F   E +  K         N      F+N AN     ETTGP+IW  +GGK+DAF
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPV-PAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTANRRAHIETTGPEIWAQTGGKLDAF 204          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.478e-32
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  126 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            D+TELIG+TP++ L N        + AKLEMM P  S+KDR+   +I+DA D G + PG  V+IE T+GNTGIGLA  A   G K I  +P  +S E++ I++ALGA +       G +G ++K  ++     N Y +  F+N  NP   Y+T GP++W    G +  F
Sbjct:    6 DITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPGG-VIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTF 173          

HSP 2 Score: 35.039 bits (79), Expect = 2.478e-32
Identity = 21/69 (30.43%), Postives = 31/69 (44.93%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRTQGIGARVLPPVFD 819
            +G +  F+AG G+ GT  G       K P +     I  P  ++LNG       +T+GIG   +P   D
Sbjct:  167 DGNIHTFVAGAGSGGTFAGTASFLKEKNPAVKTV--IVEPVGSILNGGEP-HAHKTEGIGMEFIPDYMD 232          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.166e-32
Identity = 76/180 (42.22%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  102 EDKCEIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            E   +I  D+ + IG TPM+ +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA RGY+ II+MP   S E+  +LRALGAE+        F   E  V     + N  PN +IL  + N +NP   Y+TT  +I     GK+D
Sbjct:   71 EKSPKILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILRQCDGKLD 249          

HSP 2 Score: 35.8094 bits (81), Expect = 4.166e-32
Identity = 23/73 (31.51%), Postives = 35/73 (47.95%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLN----GRTTWETLRTQGIGARVLPPVFD 819
            +G+L + +A +GT GT+TG       K P   R +G+ P  S +       +T   T   +GIG   +P V D
Sbjct:  245 DGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLD 316          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.166e-32
Identity = 76/176 (43.18%), Postives = 98/176 (55.68%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            +I  D+ + IG TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA RGY+ II+MP   S E+  +LRALGAE+        F   E  V     + N  PN +IL  + N +NP   Y+TT  +I     GK+D
Sbjct:   75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 249          

HSP 2 Score: 35.8094 bits (81), Expect = 4.166e-32
Identity = 23/73 (31.51%), Postives = 35/73 (47.95%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLN----GRTTWETLRTQGIGARVLPPVFD 819
            +G+L + +A +GT GT+TG       K P   R +G+ P  S +       +T   T   +GIG   +P V D
Sbjct:  245 DGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLD 316          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.706e-30
Identity = 74/176 (42.05%), Postives = 98/176 (55.68%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            +I  D+   IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA +GY+ II+MP   S+E+  +LRALGAE+        F   E  V     + N  PN +IL  + N +NP   Y+ T  +I     GK+D
Sbjct:   72 KILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLD 246          

HSP 2 Score: 31.5722 bits (70), Expect = 3.706e-30
Identity = 22/73 (30.14%), Postives = 35/73 (47.95%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRTTWETLRT----QGIGARVLPPVFD 819
            +G+L + +A  GT GT+TG       K P   + +G+ P  S +       +T +T    +GIG   +P V D
Sbjct:  242 DGKLDMLVASAGTGGTITGIARKLKEKCPG-CKIIGVDPEGSILAEPEELNQTEQTAYEVEGIGYDFIPTVLD 313          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.826e-30
Identity = 74/176 (42.05%), Postives = 98/176 (55.68%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            +I  D+ + IG TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA +GY+ II+MP   S+E+  +LRALGAE+        F   E  V     +    PN +IL  + N +NP   Y+TT  +I     GK+D
Sbjct:   75 KILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQEIPNSHILDQYRNASNPLAHYDTTAEEILQQCDGKLD 249          

HSP 2 Score: 30.4166 bits (67), Expect = 4.826e-30
Identity = 21/73 (28.77%), Postives = 33/73 (45.21%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLN----GRTTWETLRTQGIGARVLPPVFD 819
            +G+L + +A  GT GT+TG       K P   + +G+ P  S +       +T       +GIG   +P V D
Sbjct:  245 DGKLDMLVASAGTGGTITGIARKLKEKCPG-CQIIGVDPEGSILAEPEELNQTEVTAYEVEGIGYDFIPTVLD 316          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_FLAS31.297e-3343.65Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]
CYSK_HAEIN1.694e-3346.20Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSM_BACSU2.213e-3342.65Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSM_CAMJE1.462e-3239.31Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSK_EMENI1.873e-3246.78Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
MCCA_BACSU2.478e-3240.24O-acetylserine dependent cystathionine beta-syntha... [more]
CBS_MACFA4.166e-3242.22Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN4.166e-3243.18Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CBS_MOUSE3.706e-3042.05Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CBS_RABIT4.826e-3042.05Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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