DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.307e-29
Identity = 75/170 (44.12%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYS 638
            + + +G+TP+V L  +       +  KLE   P  SVKDR A SMI  AE +G I PG T LIE TSGNTGI LA  AA +GYK+I+IMP   + ER+  + A GAE+ L     G EG  +   + L R   G +L  F N  NPE  Y +TGP+IW  +GG +  F S
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEG-ARDLADKLQREGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVS 175          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.944e-28
Identity = 70/173 (40.46%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            I  ++ + IG TP+V +N V       + AK E      SVKDRI + MI DAE+ G I  G T LIE TSGNTGIGLA  AA +GYK+II +P   S E+  +L+ALGAE+        F   E  +   +++ +  PN +IL  + NP+NP   Y+ T  ++     GK+D
Sbjct:   32 IMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPSNPLAHYDGTAEELLEQCEGKID 203          

HSP 2 Score: 27.7202 bits (60), Expect = 1.944e-28
Identity = 18/72 (25.00%), Postives = 35/72 (48.61%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLNGRT---TWETLRTQGIGARVLPPVFD 819
            EG++ + +   GT GT+TG       + P  +  +G+ P  S +    +   T ++ + +GIG   +P V +
Sbjct:  199 EGKIDMIVCTAGTGGTITGIARKIKERLPNCI-VVGVDPHGSILAQPESLNNTNKSYKIEGIGYDFIPNVLE 269          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.389e-27
Identity = 75/176 (42.61%), Postives = 98/176 (55.68%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVD 626
            +I  D+   IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA +GY+ II+MP   S+E+  +LRALGAE+        F   E  V     + N  PN +IL  + N +NP   Y+ T  +I     GKVD
Sbjct:   72 KILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVD 246          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.603e-27
Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  102 EDKCEIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKI 599
            E + + + +V +L+G+TP++ L  +    G   +I AKLE+  P  S+KDRIA SM+++AE  G I P ++ LIE TSGNTGIGLA I A +GY+ II +P   S E+  +L+ALGAE+     A  +   E  +   +++    P   IL  + N  NPE  Y  TG +I
Sbjct:    5 EQQADSRHNVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREI 175          

HSP 2 Score: 25.7942 bits (55), Expect = 1.603e-27
Identity = 18/70 (25.71%), Postives = 33/70 (47.14%), Query Frame = 1
Query:  622 LMLFIAGIGTRGTVTGAGEIP*RKEPQILRYMGIKPPESAVLN----GRTTWETLRTQGIGARVLPPVFD 819
            L   +AG GT GT++G  +   +++   ++ +G  P  S +       +T     + +GIG   +P V D
Sbjct:  188 LRAVVAGAGTGGTISGISKYL-KEQNDKIQIVGADPFGSILAQPENLNKTDITDYKVEGIGYDFVPQVLD 256          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.370e-27
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 3
Query:  141 IGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFE---GFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            IG TP++ LN + +     I AK E   P  SVKDR AY +++DAE KG ++ G T+ +E T+GNTGIGLA IA +RGYK +I MP+T S  +   L+ LGAEV+   P   F     +  +       TPN      F+N AN    YETTGP+IW+ + G VD F
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI-VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPV-PVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGF 185          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.042e-27
Identity = 77/204 (37.75%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  120 KKDVTELIGHTPMVYLNNVVDGCV---ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            ++ + +L+G+TP+V +   +   +     I AKLE   P  SVKDR A SM  DA  +GLI  GK V+I+ TSGNTGI LA + A+ G  + + MP+  S ER+ I++A GA++YL DP  G +G +    E++ + P  Y+ L  + NPAN +  + +TG +IWN + G++  F +            G  LK   PNI+V G
Sbjct:   22 RETILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRITHFVA-GIGTGGTIMGTGRRLKIYNPNIQVIG 223          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_PSESY (Cysteine synthase B (Fragment) OS=Pseudomonas syringae pv. syringae GN=cysM PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.280e-27
Identity = 71/163 (43.56%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGG 617
            + + +G+TP+V L  +       +  KLE   P  SVKDR A SMI  AE +G I PG T LIE TSGNTGI LA  AA +GY++I+IMP   S ER+  + A GAE+       G EG  +   E +     G +L  F N  NPE  Y +TGP+IW  +GG
Sbjct:    8 IADCVGNTPLVRLQRMAGNTSNTLLLKLEGNNPAGSVKDRPALSMITRAELRGQIHPGDT-LIEATSGNTGIALAMAAAIKGYRMILIMPDNSSAERKAAMTAYGAELISVSKDDGMEG-ARDLAERMQAEGRGKVLDQFANGDNPEAHYTSTGPEIWRQTGG 168          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.316e-25
Identity = 71/183 (38.80%), Postives = 96/183 (52.46%), Query Frame = 3
Query:  114 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT-VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA--VGFEGFVKKG-EEILNRTPN------GYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            +I   V  LIG+T MV + ++       I AK E + P +S KDR+A  MI+ AE+ G + P ++  + E T+G+TGI +A +  S GY   I MPS  S E+  IL  LGA V    PA  V    FV        N T +      GY    FENPAN +  + +TGP+IW    GK+DAF
Sbjct:   41 DIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAF 223          

HSP 2 Score: 28.8758 bits (63), Expect = 5.316e-25
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  616 GRLMLFIAGIGTRGTVTGAGEIP*RKEPQI 705
            G+L  FIAG GT GT+ G       K+P I
Sbjct:  218 GKLDAFIAGSGTGGTIAGISRYLKSKDPSI 247          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.918e-25
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 3
Query:  120 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT-VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-----GFEGFVKKGEEILNRTPNG---YILGPFENPANPEIPYETTGPKIWNDSGGKVDAF 632
            K+ V ELIG+TP+V + ++       I AKLE+  P  S KDR+A ++IK AE+ G +  G+   + E TSG+TGI +A +  + GY+  I +P   S+E+  +L +LGA V    PA       +    KK    L ++ NG        FEN AN ++ Y+TTGP+I + + G +DAF
Sbjct:   46 KEGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAF 225          

HSP 2 Score: 27.335 bits (59), Expect = 6.918e-25
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  613 EGRLMLFIAGIGTRGTVTGAGE 678
            +G +  FIAG GT GT+TG  +
Sbjct:  219 KGNIDAFIAGCGTGGTITGVAK 240          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.531e-24
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  135 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWND 608
            + +G+TP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+ PG T+L E TSGNTGI LA  A  +GY+LI +MP   S+ERR +L   GA++  +    G    V   +E+    P+  +L  + NPAN +  Y  TGP++  D
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD 172          

HSP 2 Score: 25.7942 bits (55), Expect = 1.531e-24
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  601 GTTPE-----GRLMLFIAGIGTRGTVTGAG 675
            GT PE       +  F+AG+GT GT+ G G
Sbjct:  164 GTGPELLADLPEITHFVAGLGTTGTLMGTG 193          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSM_PSEAE3.307e-2944.12Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CBS_DICDI1.944e-2840.46Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CBS_RAT1.389e-2742.61Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_YEAST1.603e-2739.77Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CYSK1_SCHPO2.370e-2743.71Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSM_AQUAE4.042e-2737.75Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
CYSM_PSESY5.280e-2743.56Cysteine synthase B (Fragment) OS=Pseudomonas syri... [more]
CYSK2_SCHPO5.316e-2538.80Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST6.918e-2537.22Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSM_MYCTU1.531e-2440.00Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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