DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.531e-24
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  135 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWND 608
            + +G+TP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+ PG T+L E TSGNTGI LA  A  +GY+LI +MP   S+ERR +L   GA++  +    G    V   +E+    P+  +L  + NPAN +  Y  TGP++  D
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD 172          

HSP 2 Score: 25.7942 bits (55), Expect = 1.531e-24
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  601 GTTPE-----GRLMLFIAGIGTRGTVTGAG 675
            GT PE       +  F+AG+GT GT+ G G
Sbjct:  164 GTGPELLADLPEITHFVAGLGTTGTLMGTG 193          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_HELPY (Cysteine synthase OS=Helicobacter pylori GN=cysM PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.998e-22
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  135 ELIGHTPMVYLNNVVDGCV---ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSR-DRNPWYCNWCRGDSLKKRTPNIKVYG 719
            + IG TP+    N  D  +   + I AKLE + P  SVKDR+   +I +    G IT  KT +IE T+GNTGI LA +A     K I ++P  +S E++ I+RALGA V     + G  G +KK +E+    P+ Y+   FENP NP   Y T  P+I  + G  + +F +       +    R   LK+R P I++ G
Sbjct:    9 DAIGRTPVFKFTNK-DYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKIT-SKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTAR--YLKERIPAIRLIG 203          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.998e-22
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  198 IAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSR-DRNPWYCNWCRGDSLKKRTPNIKVYG 719
            I AKLE + P  SVKDR+   +IK+A     IT   T +IE T+GNTGI LA +A     K I ++P  +S E++ I+RALGA V     + G  G +KK +E+    P+ Y+   FENP NP   Y T  P+I  + G  + +F +       +    +   LK+R PNI++ G
Sbjct:   31 IYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAK--YLKERIPNIRLIG 202          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.375e-19
Identity = 62/202 (30.69%), Postives = 94/202 (46.53%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAF---------------YSRDRNPWYCNW 668
            I   + E +G+TP++ + ++ +     I  K E M P  S KDR+A  +I D E KGL+  G T+ +E T+G+TGI L  +  SRGY + + +P   S E+  +L  LGAE  +  P VG      F+    +        +    F+N +N    Y  T  +IW  + G VD F               Y ++ NP   NW
Sbjct:   38 ISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKGSTI-VEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQTKGDVDGFVAAAGTGGTVAGISSYLKEVNPNIQNW 237          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.544e-13
Identity = 51/152 (33.55%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  129 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY-----LADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPE 569
            VT+LIG TP++ ++  V G  A +  K+E   P  S+KDR+A SM+  A   G + PG T+ +E +SGNTG GLA  A   G + I ++    + ++  ++RALGAE+        +  V      +   ++  + P    +   +NPANPE
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPE 154          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSM_MYCBO1.531e-2440.00Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSM_HELPY2.998e-2236.18Cysteine synthase OS=Helicobacter pylori GN=cysM P... [more]
CYSM_HELPJ2.998e-2237.71Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSK_DICDI2.375e-1930.69Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
Y4XP_RHISN2.544e-1333.55Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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