DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.490e-55
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   58 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            + LP RIIKETQRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+APNP
Sbjct:    2 AELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNP 118          

HSP 2 Score: 55.4546 bits (132), Expect = 5.490e-55
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL+ ++ + WKTNEAQA+ETA+ WTRLYA
Sbjct:  118 PDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.444e-52
Identity = 86/116 (74.14%), Postives = 105/116 (90.52%), Query Frame = 1
Query:   58 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            ++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYHPNID+LGRICLD+LK  WSPALQIRTVLLSIQALL++PNP
Sbjct:    2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNP 117          

HSP 2 Score: 38.5058 bits (88), Expect = 2.444e-52
Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            P+DPL+ ++ + W  NE  A   A+EWT+LYA
Sbjct:  117 PNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.912e-50
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 1
Query:   64 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            LP+RIIKE + L  +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EYPM  P VRFLTKIYHPN+DKLGRICL  LK  WSPALQIRTVLLSIQAL+ APNP
Sbjct:    3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNP 116          

HSP 2 Score: 46.595 bits (109), Expect = 4.912e-50
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL  ++ K WK NE QA+  A+EWT+ YA
Sbjct:  116 PDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.149e-32
Identity = 64/115 (55.65%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNP 405
            R+ +E Q L  EP PG+    +E NM      I+G + SPYEGG+F LE+ +PE YP   PK+RFLT IYHPNID  GRICLDIL    K  W PAL I TVL SIQ L+S PNP
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNP 120          

HSP 2 Score: 31.9574 bits (71), Expect = 4.149e-32
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL  +I   +K N A     AK+WT  +A
Sbjct:  120 PDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.460e-32
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NP
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANP 116          

HSP 2 Score: 38.5058 bits (88), Expect = 5.460e-32
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT++A+   TAKEWT+ YA
Sbjct:  116 PDDPLVPEIAQIYKTDKAKYEATAKEWTKKYA 147          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.111e-32
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GPT SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 36.1946 bits (82), Expect = 7.111e-32
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT+ A+   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.206e-31
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 35.4242 bits (80), Expect = 1.206e-31
Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT+ ++   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.571e-31
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 36.1946 bits (82), Expect = 1.571e-31
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT+ A+   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.045e-31
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 36.5798 bits (83), Expect = 2.045e-31
Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT+ A+   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.518e-31
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 34.6538 bits (78), Expect = 4.518e-31
Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT++ +   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UE2NL_HUMAN5.490e-5576.92Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC13_YEAST2.444e-5274.14Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO4.912e-5071.93Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2T_XENLA4.149e-3255.65Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC5_YEAST5.460e-3252.68Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_SOLLC7.111e-3251.79Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH1.206e-3151.79Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH1.571e-3150.89Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH2.045e-3150.00Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH4.518e-3150.89Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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