DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 135          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 135          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 135          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            +R++ E ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +YP++ PK+RF  +++HPNI   GR+C+ IL              ++WSP   +  +LLS+ ++L+ PN
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 131          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            +R++ E ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +YP++ PK+RF  +++HPNI   GR+C+ IL              ++WSP   +  +LLS+ ++L+ PN
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 131          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            +R++ E ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +YP++ PK+RF  +++HPNI   GR+C+ IL              ++WSP   +  +LLS+ ++L+ PN
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 131          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.911e-16
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 402
            +R++ E ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +YP++ PK+RF  +++HPNI   GR+C+ IL              ++WSP   +  +LLS+ ++L+ PN
Sbjct:    7 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 131          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.294e-15
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  142 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS-IQALLSAPNP 405
            D M+ F V   GP  S Y+GGV+K+ + LP+ YP  +P V F+TKIYHPN+D+L G +CLD++   WSP   +  V  + +  LL  PNP
Sbjct:   27 DGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNP 116          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.691e-15
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPN 402
            RRI  +  +LL         +   DNM+ F V   GP+++PY GG++K+ + LP EYP  +P + F+ +I+HPNID+L G +CLD++   WSP   +  +  + +  LL  PN
Sbjct:    6 RRIETDVMKLLMSD---YEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPN 115          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 1.691e-15
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPR 408
            R++KE + L  +P P +    S+D N+  ++ ++L P Q PY    F L +  P EYP   P ++F TKIYHPN+D+ G+ICL I+  + W P  +   VL ++  L++ PN R
Sbjct:    6 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIR 118          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UB2R2_RABIT9.911e-1635.20Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE9.911e-1635.20Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN9.911e-1635.20Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2G2_PONAB9.911e-1634.40Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE9.911e-1634.40Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN9.911e-1634.40Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN9.911e-1634.40Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC4_ARATH1.294e-1545.56Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC8_SCHPO1.691e-1537.17Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UB2L6_HUMAN1.691e-1537.72Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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