DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.662e-31
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            RRI+KE + L  +P    SA P+ ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 30.4166 bits (67), Expect = 7.662e-31
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I   +KT++ +    A+ WT+ YA
Sbjct:  115 PDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.662e-31
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 34.2686 bits (77), Expect = 7.662e-31
Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT++ +   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 7.662e-31
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  +++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNP
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNP 115          

HSP 2 Score: 38.1206 bits (87), Expect = 7.662e-31
Identity = 18/32 (56.25%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I   +KT  AQ   TA+EWTR YA
Sbjct:  115 PDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.673e-30
Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNP 405
            R+ +E   L +EP PGI+    +D M      ILG   +PYE GVFKLE+ +PE YP   P++RFLT IYHPNID  GRICLD+L    K  W P+L I TVL SIQ L+S PNP
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120          

HSP 2 Score: 31.187 bits (69), Expect = 1.673e-30
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL  +I   +K N+   ++ A++WT  +A
Sbjct:  120 PDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.692e-30
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE Q L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          

HSP 2 Score: 36.1946 bits (82), Expect = 1.692e-30
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +  E A+EWTR YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNELAREWTRKYA 146          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.869e-30
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PK+ F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NP
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANP 116          

HSP 2 Score: 34.2686 bits (77), Expect = 2.869e-30
Identity = 15/32 (46.88%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I   +KT+  +   TA+EWT+ YA
Sbjct:  116 PDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.865e-30
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI +E   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI +LL+ PNP
Sbjct:    4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNP 115          

HSP 2 Score: 33.8834 bits (76), Expect = 4.865e-30
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I   +KT+ ++   +A+EWTR YA
Sbjct:  115 PDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.865e-30
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE + L  +P    SA P+ D+M  +   I+GP  SP+ GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL +  VLLSI +LL+ PNP
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNP 115          

HSP 2 Score: 34.2686 bits (77), Expect = 4.865e-30
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDPL   I   +KT+  +   TA+ WT+ YA G
Sbjct:  115 PDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.335e-30
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115          

HSP 2 Score: 33.4982 bits (75), Expect = 6.335e-30
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +  + A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.335e-30
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  +++ ++   I+GP  SPY GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+D+WSPAL I  VLLSI ++L+ PNP
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNP 115          

HSP 2 Score: 35.8094 bits (81), Expect = 6.335e-30
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PD+PL   I   +KT+ A+   TA+EWTR YA
Sbjct:  115 PDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UBC29_ARATH7.662e-3152.68Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC9_ARATH7.662e-3150.89SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC1_MAGGR7.662e-3150.89Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBE2T_HUMAN1.673e-3053.04Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBCD1_DROME1.692e-3052.68Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_YEAST2.869e-3051.79Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SCHPO4.865e-3051.79Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC30_ARATH4.865e-3050.89Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC2_CAEEL6.335e-3052.68Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_COLGL6.335e-3050.89Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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