DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.984e-12
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   58 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 393
            S   +R+ KE   L + P P IS +   DN+  + + + G   S Y+G  FKL+      YP+ +P+V F+ T   HP+I   G ICL IL D WSPAL + +V LSI ++LS
Sbjct:    3 SRYAKRLQKELLDLKTNPPPCISITEG-DNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.984e-12
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   10 NP*VKKQKKSILEMA-------NSNLPRRIIK---ETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            NP  K   K+I  M        N+ L +++I+   E   ++    P I    +E ++ ++ ++  GP  +PY+ G +   +   EEYP  AP +RF+T I H NI+  GR+C  IL   ++P ++I  +L  I  LL  P+
Sbjct: 1106 NPTKKLHAKAISPMEIISKTNENTKLSQKLIRVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPD 1246          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  166 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +I+ P +  Y  G F     +   YP   PKV+  T++YHPNID  G +CL+IL++ W+P L I +++  +Q L   PNP
Sbjct:   59 LIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNP 138          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.090e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            R+ K+   L    +  IS    ++++  F V I  P +  Y  G F     +   YP  APKV+  TK+YHPNID  G +CL+IL++ W P L I TV+  +  L + PN
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPN 143          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 31/100 (31.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  139 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL------------DILKDKWSPALQIRTVLLSIQALLSAPN 402
            + N+  + V I+GP ++ Y+GG F   +  P+ YP + P VRF ++++HPN+   GR+C+            ++  ++W+P   + +++LSI ++LS+PN
Sbjct:   34 DSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPN 133          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  166 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +I+ P +  Y  G     L   E YP+  PKV  L KI+HPNID  G +CL+IL++ WSPAL +++++  +  L   PNP
Sbjct:   66 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNP 145          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 396
            R+ KE       P  G     + DN++ + + + G   + Y    ++L++  PE YPM AP+V F++    HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:   19 RLQKELSEWQLNPPTGFRHKVT-DNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSS 126          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   70 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS 393
            R ++KE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 37/115 (32.17%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   70 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS 393
            R ++KE   L +  P       P  + + YF++ +  P +S Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +
Sbjct:   35 RLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTV-SPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNP 405
            +R+ +E ++   +   G  A P +      +++ +   I G   + + GGV+ + +  P EYP   PKV+F    YHPN+   G ICL IL +   W PA+ ++ ++L +Q LL +PNP
Sbjct:    7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNP 125          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UBE2W_DICDI2.984e-1239.82Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBC4_MIMIV2.984e-1230.50Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC12_DROME3.897e-1238.75NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UB12L_ARATH5.090e-1236.36Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC7_WHEAT6.648e-1231.00Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC12_YEAST6.648e-1241.25NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC15_ARATH1.134e-1135.78Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBE2F_XENTR1.481e-1132.17NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA1.481e-1132.17NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC9_YEAST1.481e-1131.93SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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