DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 38/123 (30.89%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   31 KKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 396
            +K++ ++A + L + +++        P  G     + DN++ + + ++G   + Y    ++L++  PE YPM +P+V FL     HP+I   G ICLDIL D WSPA+ + ++ +SI ++LS+
Sbjct:    9 RKTLSKIATNRLQKELVEWQMN----PPTGFKHKVT-DNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSS 126          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.934e-11
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   49 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 396
            MA     +R+ KE + ++  P P I A P+EDN+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T    + PN     R+CL   D   D W+P   + T+L  + + +++
Sbjct:    1 MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTS 117          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   49 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 393
            MA+    +R+ KE + +   P P I A+P EDN+  ++ +I GP ++PYE G +   L  P +YP   P +R LT   +    +  R+CL   D   D W+P+  + T+L  + + ++
Sbjct:    1 MASRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  139 EDNMRYFN----VMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL------------KDKWSPALQIRTVLLSIQALLSAPN 402
            ED+   F     VM+L    S Y GG FK ++  PE++P + P+ RF   IYHPN+ + GR+C+ IL             + WSP   + +VL+SI +LL  PN
Sbjct:   34 EDDSNIFTWNIGVMVLNE-DSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPN 136          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.299e-11
Identity = 31/93 (33.33%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  133 PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS 393
            P  + + YF + ++ P +  Y+GG F+ E+ +P+ Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +
Sbjct:   57 PDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.309e-11
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   70 RRIIKETQRLLSE-PAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS 393
            R +IKE   L +  P+      P E+ + +F + I  P +  Y GG F+ E+ +PE Y M  PKV+ LT+I+HPNI + G ICL +L++       W+P   ++ V+  + +L +
Sbjct:   35 RLLIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFT 148          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.309e-11
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 396
            R+ KE     + P  G     S DN++ + + + G   + Y    ++L++  PE YPM AP+V F      HP+I   G ICLD+L D WSPA+++ ++ LSI ++LS+
Sbjct:   19 RLQKEFMEWQTNPPSGFKHRVS-DNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSS 126          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.600e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   49 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 393
            MA+    +R+ KE + +++ P P I A+P EDN+  ++ +I GP  +PYE G +   L  P +YP   P +R +T   +    +  R+CL   D   + W+PA  + T+L  + + ++
Sbjct:    1 MASIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.600e-11
Identity = 35/118 (29.66%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   49 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 393
            MA     +R+ KE + ++  P P I A P+E+N+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T   +    +  R+CL   D   D W+P   + T+L  + + ++
Sbjct:    1 MATKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.600e-11
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 396
            R+ KE       P  G     + DN++ + + + G   + Y    + L++  P+ YPM AP+V F+     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:   19 RLQKELSEWQVNPPTGFKHRVT-DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UBC16_ARATH1.481e-1130.89Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC6_YEAST1.934e-1131.40Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC6_ASHGO2.526e-1131.36Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC3_YEAST2.526e-1137.50Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBE2F_CHICK3.299e-1133.33NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBE2F_DANRE4.309e-1133.91NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBC17_ARATH4.309e-1135.78Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBC6_KLULA9.600e-1130.51Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_CANGA9.600e-1129.66Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC18_ARATH9.600e-1134.86Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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