DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.250e-30
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNP 115

HSP 2 Score: 34.2686 bits (77), Expect = 8.250e-30
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +   TA+EWT+ YA
Sbjct:  115 PDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.250e-30
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EYP   PKV F T+IYHPN++  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNP 115

HSP 2 Score: 34.2686 bits (77), Expect = 8.250e-30
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +   TA+EWT+ YA
Sbjct:  115 PDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.074e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-29
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.074e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-29
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.074e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-29
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.074e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-29
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.074e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 32.7278 bits (73), Expect = 1.074e-29
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    A+EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.381e-29
Identity = 61/115 (53.04%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   73 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNP 405
            R+ KE   L  EP PGI+    +D +      ILG   +PYE GVF LE+ +PE YP   P+VRFLT IYHPNID  GRICLDIL    K  W P+L I TVL SIQ L++ PNP
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNP 120

HSP 2 Score: 32.3426 bits (72), Expect = 1.381e-29
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL  +I   +K N+   ++ AK+WT  +A
Sbjct:  120 PDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.372e-29
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +YP+  PK+   TKIYHPNI+  G ICLDILKD+WSPAL I  VLLSI +LL+  NP
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANP 115

HSP 2 Score: 33.113 bits (74), Expect = 2.372e-29
Identity = 15/32 (46.88%), Postives = 19/32 (59.38%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I   +K +  +   TAKEWT+ YA
Sbjct:  115 PDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146
[Close]
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.088e-29
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 1 
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNP
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

HSP 2 Score: 31.187 bits (69), Expect = 3.088e-29
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 2 
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDPL   I + +KT+  +    ++EWT+ YA
Sbjct:  115 PDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
U2D2B_RAT8.250e-3050.89Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE8.250e-3050.89Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D2_XENLA1.074e-2952.68Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.074e-2952.68Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.074e-2952.68Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.074e-2952.68Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.074e-2952.68Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBE2T_MOUSE1.381e-2953.04Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC4_CANAL2.372e-2951.79Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D3_RAT3.088e-2952.68Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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