DY260313

Overview
NameDY260313
Unique NameDY260313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.972e-24
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   49 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            MAN  + R  R  KE  +        I     ++N       I GP  +PYEGG ++LE+ +PE YP   PKVRF+TKI+HPNI  + G ICLDILKD+W+ A+ +RTVLLS+QALL+A  P
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEP 122          

HSP 2 Score: 28.1054 bits (61), Expect = 1.972e-24
Identity = 11/32 (34.38%), Postives = 16/32 (50.00%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYA 499
            PDDP    +   +K N     +TA+ W  +YA
Sbjct:  122 PDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.992e-24
Identity = 46/111 (41.44%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPN 117          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.992e-24
Identity = 46/111 (41.44%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPN 117          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.398e-24
Identity = 45/111 (40.54%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            RR++++ +R+  +P  G+SASP  DN+  +N +I+GP ++P+E G F++ L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L S+Q+LL+ PN
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPN 117          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.640e-24
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   55 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            + N  RRI KE   +  +   GI      D++ +   M  GP  +PYEGG F +++ +P +YP   PK+ F TKIYHPN+  + G ICLDILKD+WSP   +++ L+S+Q+LL  P P
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEP 119          

HSP 2 Score: 28.4906 bits (62), Expect = 5.640e-24
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYAS 502
            P +P    + + +  N  Q V TA+EWT  YA+
Sbjct:  119 PSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAA 151          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.360e-24
Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   49 MANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            MAN  + R  R  KE  R        I      D+       I GP  +PYEGG F LE+ +PE YP   PKVRF+T+I+HPNI  + G ICLDILKD W+ A+ +RTVLLS+QALL+A  P
Sbjct:    1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEP 122          

HSP 2 Score: 28.1054 bits (61), Expect = 7.360e-24
Identity = 13/34 (38.24%), Postives = 16/34 (47.06%), Query Frame = 2
Query:  404 PDDPLSENIRKHWKTNEAQAVETAKEWTRLYASG 505
            PDDP    +   +K      + TAK WT  YA G
Sbjct:  122 PDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.291e-23
Identity = 46/111 (41.44%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            RR++++ +R+  +   G+SASP  DN+  +N +I+GP  +P+E G F+L L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   + ++L SIQ+LL+ PN
Sbjct:    7 RRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPN 117          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.203e-23
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   55 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 402
            N  + +R+ KE   L+     GISA P  +N+  +   I GP  + Y G  ++L L  P  YP AAP V+FLT  +HPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN
Sbjct:   30 NHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPN 145          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   70 RRIIKETQRLLSEPAPGISASPSEDN-MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPR 408
            +R+  E  +LLS     ISA P +DN + Y+   I GP  +PY G  FK+ L  P+ YP   P ++FL+ ++HPN+DK G ICLDILK+KWS    + T+LLS+Q+LL  PN R
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNR 124          
BLAST of DY260313 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.877e-23
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   61 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP 405
            NLP    RR+ KE   L S+P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P A PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP
Sbjct:    7 NLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNP 125          
The following BLAST results are available for this feature:
BLAST of DY260313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
UBE2K_BOVIN1.972e-2447.54Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC2_EMENI1.992e-2441.44Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.992e-2441.44Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_YARLI3.398e-2440.54Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC1_SCHPO5.640e-2442.37Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBCD4_DROME7.360e-2448.36Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC2_DEBHA1.291e-2341.44Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2C_DROME2.203e-2347.41Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC11_YEAST2.877e-2346.49Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2SB_XENLA2.877e-2346.22Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260313 ID=DY260313; Name=DY260313; organism=Citrus clementina; type=EST; length=1301bp
CTCTGCAACAACCCTTAGGTTAAAAAACAAAAAAAATCGATCTTGGAAAT
GGCGAACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCC
TCAGTGAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATG
CGATACTTTAATGTGATGATCCTTGGTCCAACACAATCTCCATATGAAGG
AGGGGTGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTG
CTCCAAAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAG
CTTGGAAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCT
CCAGATTCGGACTGTACTTTTGAGCATTCAAGCACTTCTGAGTGCTCCTA
ACCCCCGATGATCCTCTCTCTGAGAACATTCGCAAACACTGGAAAACAAA
TGAGGCCCAAGCGGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCA
GTGGTGCTTGATGACATGGTGGAAAATATCCCTTCCTCCAAATAACCATT
GTGCAATGTATGCCTACTCACTGTGTTTAAACATGAAAATTTGGAAAAAA
TGAATTGCTGTTCGAACCATTCCGATTTTGCCATCTCCCAAAAAAAAAAA
AAAAAAAAAAACCCCCCCTTCCTTGGACCACTGTCGTCACTATACCACCG
CCTTCTTCTATCCAATTTCTTGCCCCCAACCGCCGCCCGTACCACCCCAT
AACAAATCCTTTAATCTTGCAACCCCAGTGATAGACCCAGTTCCATACAA
GCGACCATACATCTCCTAACACAACCGCCTAACCAGCCCAAGCCCAATCC
CCTATCTCCCCCAACTCCTCACCTAAACCATTATCCTCTACACCCAATAC
CTATCTCCCTCGCCCCCCAAATTAAACCCCCTCCAACACACAAATAACCA
GGCATGTAAACGATCATATTAACAACTGCCAAGAACTACAACTACCCAAC
AGTCCCTACACAACTCGATTTACGTATCCTTAACAGTTACTACTCCTCAT
CATTACCGTCTGCCCCTATCTACCGTCATATCTAAAACTGCGCTCACCAC
GCAAAATCCTCAATACCATTGTACCCGCCACACATCACGCCAGTATCTTC
CCAACACCTCTACCACGTACACTACCTCCCTCCACACTACATCTCGTCCC
GTCCTTTCTTCCTCCCTCGACATGCCTTGAAGTTCTCTCACATCACAGTA
CCATCTATCACTCTCACTCCAATGCAATATGTACACTCTTTACTTCTGAT
A
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