DY260317

Overview
NameDY260317
Unique NameDY260317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV V  KHNDDEQY WES AGGSFTV  D +GE LGRGTK+ LHLKED  EYLEERR+K+++KKHS+F+ YPI L++EK
Sbjct:  140 AYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRLD-NGEPLGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIRLFVEK 223
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV V  KHNDDEQY WES AGGSFTV  DT GE +GRGTK+  HLKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  141 AYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVIPHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 224
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV+V  KHNDDEQY WES AGGSFTV  D  GE +GRGTK+ L+LKED  EYLEERR+K+++KKHS+F+ YPI+L++EK
Sbjct:  136 AYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRTD-HGEPIGRGTKVILYLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYVEK 219
[Close]
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HS902_HUMAN (Putative heat shock protein HSP 90-alpha A2 OS=Homo sapiens GN=HSP90AA2 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = 2 
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYLVAEKV V  KHNDDEQY WES AGGSFTV  DT GE +GRGTK+ LHLKED  EYLEE+R+K+++KKHS+ + YPI+L++EK
Sbjct:  141 AYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GERMGRGTKVILHLKEDQTEYLEEQRIKEIVKKHSQLIGYPITLFVEK 224
The following BLAST results are available for this feature:
BLAST of DY260317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
HS90B_PONAB2.933e-2970.59Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MOUSE2.933e-2970.59Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HS90B_MACFA2.933e-2970.59Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN2.933e-2970.59Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE2.933e-2970.59Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90B_BOVIN2.933e-2970.59Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HS90A_CHICK3.830e-2971.76Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
HS90A_PANTR6.534e-2970.59Heat shock protein HSP 90-alpha OS=Pan troglodytes... [more]
HS90B_CHICK1.114e-2869.41Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HS902_HUMAN1.114e-2869.41Putative heat shock protein HSP 90-alpha A2 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YC02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260317 ID=DY260317; Name=DY260317; organism=Citrus clementina; type=EST; length=684bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCCACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAAGAAGCACTCTGAGTTCCTTAGTTACCCCATTTCCCTCTGGATT
GAGAAGACCCCTGAGAAGGAGATTTCTGATGATGAAGACCAGGAAGAAAA
GAAGGATGAGGAGGGTAAAGTTGAAGAAGTTGATGAAAAAAAAGAGAAGG
AAGAAAAGAAAAACAAAAACAACCGGGAGGTGTCCCCTGAGTGGGCCCTT
GGTGAACCACCCCAACCCCCTTTGGGAAGAGAAACCCGAAGAAAATTCCC
AAAAAAAAACTAGGCCCCCCTTCCCCCCAATTCCCGACCCATGACCGGGG
AGGAACCCCCCGGCCCGGTAACCCCCCTCCCCCGTTGAAGCGCCCCCCCT
GGGTTTTAACGGCCCCCCCCCCCTTTCCCCCCCACACAGGCCCCCCTTTT
TGCCCCCCCTGAACCCCCCGGGAAAAAAGCCCCCAACAAATAAACCAGGC
CTCCCCCTCCCCCCCCCGGGTCCCTCCCCCCGGG
back to top