DY260317

Overview
NameDY260317
Unique NameDY260317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 48/85 (56.47%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            A+LVA+KV+VT+K+NDD+ Y WES AGGSF V      E+  RGTKI +H+KED +++LEER++K+++KKHS+F+ YPI L +EK
Sbjct:  129 AFLVADKVVVTSKNNDDDSYQWESSAGGSFVVRPFNDPEVT-RGTKIVMHIKEDQIDFLEERKIKEIVKKHSQFIGYPIKLVVEK 212          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HSP83_DROPE (Heat shock protein 83 (Fragment) OS=Drosophila persimilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            AYL+A++V VT+K+NDDEQY+WES   GSFT   D + E L RGTKI L++KED  +YLEE ++K+++ KHS+F+ YPI L +EK
Sbjct:  129 AYLIADRVTVTSKNNDDEQYVWESXXXGSFTXKAD-NXEPLXRGTKIXLYIKEDQTDYLEESKIKEIVNKHSQFIGYPIKLLVEK 212          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 46/84 (54.76%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    5 YLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            YLV + V V +KHNDD+QYIWES+A G+F ++ D   E LGRGT+I LHL+++  EYL+E +LK+L+K++SEF+++PI LW  K
Sbjct:  204 YLVPDYVEVISKHNDDKQYIWESKADGAFAISEDVWNEPLGRGTEIRLHLRDEAQEYLDEFKLKELVKRYSEFINFPIYLWASK 287          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 39/84 (46.43%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    5 YLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            +LVA+ V+VT+K NDD+QY+W S +  S+T+ +D  G  LGRGT+I+LH+K+D  E+L++  +K L+KK+S+F+++PI L++ +
Sbjct:  177 FLVADSVVVTSKSNDDDQYVWTSDSQSSYTIAKDPKGNTLGRGTRISLHIKDDSKEFLDQEVIKQLVKKYSQFINFPIYLYVSE 260          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            AYLVAEKV +T KHND+EQY W S AG SFT+  D  GE + R TK+ LHLKED  EYLEER +K+++KKH +F+   I++++EK P
Sbjct:  112 AYLVAEKVAIT-KHNDEEQYSWVSSAGSSFTLHVD-HGEPIDRDTKVILHLKEDQTEYLEERWVKEVVKKHPQFIGCLIAVYLEKEP 196          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+KK+S+F+++PI +W  KT
Sbjct:  123 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 207          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_PONAB (Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+KK+S+F+++PI +W  KT
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 286          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+KK+S+F+++PI +W  KT
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 286          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_MACFA (Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+KK+S+F+++PI +W  KT
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 286          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: ENPL_HUMAN (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            A+LVA+KVIVT+KHN+D Q+IWES +   F+V  D  G  LGRGT ITL LKE+  +YLE   +K+L+KK+S+F+++PI +W  KT
Sbjct:  202 AFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT 286          
The following BLAST results are available for this feature:
BLAST of DY260317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
HSP90_CAEEL9.138e-2356.47Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP83_DROPE3.473e-2256.47Heat shock protein 83 (Fragment) OS=Drosophila per... [more]
ENPL_CATRO4.535e-2254.76Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
ENPL_DICDI1.905e-2046.43Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
H90B4_HUMAN3.250e-2057.47Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
ENPL_RABIT7.241e-2054.65Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]
ENPL_PONAB7.241e-2054.65Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1[more]
ENPL_PIG7.241e-2054.65Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]
ENPL_MACFA7.241e-2054.65Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2... [more]
ENPL_HUMAN7.241e-2054.65Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260317 ID=DY260317; Name=DY260317; organism=Citrus clementina; type=EST; length=684bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCCACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAAGAAGCACTCTGAGTTCCTTAGTTACCCCATTTCCCTCTGGATT
GAGAAGACCCCTGAGAAGGAGATTTCTGATGATGAAGACCAGGAAGAAAA
GAAGGATGAGGAGGGTAAAGTTGAAGAAGTTGATGAAAAAAAAGAGAAGG
AAGAAAAGAAAAACAAAAACAACCGGGAGGTGTCCCCTGAGTGGGCCCTT
GGTGAACCACCCCAACCCCCTTTGGGAAGAGAAACCCGAAGAAAATTCCC
AAAAAAAAACTAGGCCCCCCTTCCCCCCAATTCCCGACCCATGACCGGGG
AGGAACCCCCCGGCCCGGTAACCCCCCTCCCCCGTTGAAGCGCCCCCCCT
GGGTTTTAACGGCCCCCCCCCCCTTTCCCCCCCACACAGGCCCCCCTTTT
TGCCCCCCCTGAACCCCCCGGGAAAAAAGCCCCCAACAAATAAACCAGGC
CTCCCCCTCCCCCCCCCGGGTCCCTCCCCCCGGG
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