DY260317

Overview
NameDY260317
Unique NameDY260317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEON (Chaperone protein htpG OS=Shewanella oneidensis GN=htpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            A++VA+KV V    A H  +E  +WES+  GSFTV   T      RGT+ITLHL++D  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 AFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVETITKAT---RGTEITLHLRDDEKEFADDWRLRSIITKYSDHISIPVEMWQEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB9 (Chaperone protein htpG OS=Shewanella baltica (strain OS195) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL+++  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMWQEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB8 (Chaperone protein htpG OS=Shewanella baltica (strain OS185) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL+++  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMWQEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            A++VA+KV V    A H  DE  +WES+  G+FTV   T      RGT+ITLHL+++  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 AFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTITKAS---RGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMWQEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            A++VA+KV V    A H  +E  +WES+  GSF V   T  E   RGT+I LHL+++  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 AFIVAKKVTVRTRAAGHAANEGVLWESEGEGSFNVESITKNE---RGTEIVLHLRDEETEFADDYRLRSIITKYSDHISVPVQMWNEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 AYLVAEKV-IVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISL 244
            A++VAE+V ++T K  +DE ++W S   G F++     GE    GT +TLHLK+D  E+LEE R++ +IK +SE +S+P+ L
Sbjct:  133 AFMVAERVDVLTRKAGEDESWLWSSDGKGEFSIE---PGERAQSGTTVTLHLKKDAKEFLEESRIRHIIKTYSEHISFPVRL 211          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQ--YIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKT 259
            AYLVA++V V ++     Q  + W S+A GSFTV      E   RGT ITLHLKED  E+L E RL+ LI ++S+++ +PI L + KT
Sbjct:  136 AYLVADRVEVVSRAAGQGQSAWRWTSEAKGSFTVE---PAERAARGTSITLHLKEDQKEFLGEWRLRSLITQYSDYVGHPIKLQVSKT 220          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            +++VA++V V    A H+ DE  +WES   G FTV   T      RGT+ITLHL++D  E+ ++ RL+ +I K+S+ +S P+ ++ E TP
Sbjct:  130 SFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTVETITKQS---RGTEITLHLRDDEKEFADDYRLRSIITKYSDHISVPVEMYEEGTP 216          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HSP82_ENCCU (Heat shock protein 90 OS=Encephalitozoon cuniculi GN=HSP90 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 2
Query:    2 AYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEK 256
            +YLVAE+V +  KH  DE  +W S     +T+  +  GE    GT + L++KE   E+L+ +R+ +++KK+S F+ YPI  ++EK
Sbjct:  149 SYLVAERVDLITKHPSDEALVWTSTGRDVYTI-EEYDGEPFAHGTSLVLYIKEGEEEFLDPKRISEIVKKYSLFVFYPIYTYVEK 232          
BLAST of DY260317 vs. ExPASy Swiss-Prot
Match: HTPG_SHESH (Chaperone protein htpG OS=Shewanella sediminis (strain HAW-EB3) GN=htpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 2
Query:    2 AYLVAEKVIV---TAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDPLEYLEERRLKDLIKKHSEFLSYPISLWIEKTP 262
            +++VA+KV V    A H  DE   WES   G FTV          RGT+I LHL+E+  E+ ++ RL+ +I K+S+ +S P+ +W E TP
Sbjct:  130 SFIVADKVTVRTRAAGHGSDEGVQWESAGEGDFTVDTIVKET---RGTEIVLHLREEEKEFADDYRLRSIITKYSDHISVPVEMWEEGTP 216          
The following BLAST results are available for this feature:
BLAST of DY260317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
HTPG_SHEON2.256e-1343.33Chaperone protein htpG OS=Shewanella oneidensis GN... [more]
HTPG_SHEB92.947e-1342.22Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB82.947e-1342.22Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB52.947e-1342.22Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEFN2.494e-1241.11Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_ROSDO2.494e-1242.68Chaperone protein htpG OS=Roseobacter denitrifican... [more]
HTPG_MYXXD5.557e-1246.59Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_SHEHH1.238e-1140.00Chaperone protein htpG OS=Shewanella halifaxensis ... [more]
HSP82_ENCCU1.617e-1137.65Heat shock protein 90 OS=Encephalitozoon cuniculi ... [more]
HTPG_SHESH4.704e-1140.00Chaperone protein htpG OS=Shewanella sediminis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YC02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260317 ID=DY260317; Name=DY260317; organism=Citrus clementina; type=EST; length=684bp
AGCTTACTTGGTTGCTGAGAAGGTTATTGTTACCGCCAAGCACAACGATG
ATGAGCAGTACATCTGGGAGTCTCAGGCCGGTGGATCATTCACTGTTACC
AGGGACACTTCTGGTGAGCTTCTTGGCCGCGGTACAAAGATCACTCTCCA
CCTCAAGGAAGACCCACTTGAGTACCTTGAGGAGCGCCGTTTGAAGGATT
TGATTAAGAAGCACTCTGAGTTCCTTAGTTACCCCATTTCCCTCTGGATT
GAGAAGACCCCTGAGAAGGAGATTTCTGATGATGAAGACCAGGAAGAAAA
GAAGGATGAGGAGGGTAAAGTTGAAGAAGTTGATGAAAAAAAAGAGAAGG
AAGAAAAGAAAAACAAAAACAACCGGGAGGTGTCCCCTGAGTGGGCCCTT
GGTGAACCACCCCAACCCCCTTTGGGAAGAGAAACCCGAAGAAAATTCCC
AAAAAAAAACTAGGCCCCCCTTCCCCCCAATTCCCGACCCATGACCGGGG
AGGAACCCCCCGGCCCGGTAACCCCCCTCCCCCGTTGAAGCGCCCCCCCT
GGGTTTTAACGGCCCCCCCCCCCTTTCCCCCCCACACAGGCCCCCCTTTT
TGCCCCCCCTGAACCCCCCGGGAAAAAAGCCCCCAACAAATAAACCAGGC
CTCCCCCTCCCCCCCCCGGGTCCCTCCCCCCGGG
back to top