DY260319

Overview
NameDY260319
Unique NameDY260319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.052e-34
Identity = 65/153 (42.48%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  302 EEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            E +  + + +++ ++  P+ +G + +LIDEN  IV SS GP + VGI   ++ ++++PG    ++ + L++V +L    D  +  M+V +AP E Y +IGGL+ QI EI+E VELPL  PE++  +GI+PPKGV+L+G PGTGKTLL +AVA+
Sbjct:   57 EREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAH 209          

HSP 2 Score: 27.335 bits (59), Expect = 2.052e-34
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +L+RE F++A    P
Sbjct:  223 LVQKYIGEGARLVRELFELAKKKSP 247          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.281e-34
Identity = 74/175 (42.29%), Postives = 112/175 (64.00%), Query Frame = 2
Query:  236 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            RI+   L       ++ERL   E +    R+++  LR  P   G + E++D++ AIV +  GP + V I  ++++D+L+PG  + +  + +++V LL  E DP V   +V + P  +Y DIGGL+ Q+ E++E VELPL HPEL+E +GI+PPKGV+LYG PG GKTL+ KAVAN
Sbjct:   23 RIRQLELQVRTLEADKERL---ERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVAN 194          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.535e-34
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  302 EEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            E +  + +S+++ L+  P+ VG + ++ID    +V SS GP + V +   V+   L+ G    ++ + L++V +L    D  V  M++  AP E+Y DIGGL+ QI EI+E VELP+T P+L+E IGI PPKGV+LYG PGTGKTLL KAVA+
Sbjct:   57 EREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAH 209          

HSP 2 Score: 27.7202 bits (60), Expect = 4.535e-34
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +L+RE F +A +  P
Sbjct:  223 LVQKYIGEGARLVRELFDLAKEKAP 247          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.905e-34
Identity = 72/186 (38.71%), Postives = 119/186 (63.98%), Query Frame = 2
Query:  218 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            R+ +LE    +L  +   + +++R L+ Q+ K E +    +S++D ++ SP+ +G + ++I  +  IV SS GP++ V +  ++D+ +L PG  + ++   L++  ++    +P V+ M+V ++    Y  IGGLD QIQE++E VELPL  PE +  IGI+PPKGV+LYG PGTGKTLL KAVA+
Sbjct:   30 RVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAH 215          

HSP 2 Score: 32.3426 bits (72), Expect = 5.905e-34
Identity = 14/55 (25.45%), Postives = 28/55 (50.91%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPPFPPLLAKMKPFVPKGINPPPGPNFKSQNPL 962
            ++  ++GDG KL+RE F++A    P    + ++     + +N   G + + Q  L
Sbjct:  229 LVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTL 283          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.687e-34
Identity = 69/153 (45.10%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  302 EEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            E +  + +S+ + LR  P+ +G + +++D N  IV SS GP + V     V+ D ++PG    ++ + L++V LL    D  V  M++  +P E Y DIGGL  QI E++E VELPL  PEL+  IGI+PPKGV+LYG PGTGKTLL KAVA+
Sbjct:   82 EREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAH 234          

HSP 2 Score: 26.5646 bits (57), Expect = 7.687e-34
Identity = 8/25 (32.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +L+RE F +A    P
Sbjct:  248 LVQKYIGEGARLVRELFDLAKKKAP 272          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.691e-34
Identity = 76/196 (38.78%), Postives = 117/196 (59.69%), Query Frame = 2
Query:  191 VTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDR------SKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            ++  SK  L  +K    ++  L EE      E+   + +K + +R      S++D L+  P+ VG + +++     I+ SS GP++ V    F++  ++ PG  + ++ + L+V+ +L    DP V  M+V  +P   Y  IGGL+AQI E+KE VELPL  PEL++ +GI+PPKGV+LYG PGTGKTLL KAVAN
Sbjct:   20 LSDFSKYLLDRVKQLEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVAN 215          

HSP 2 Score: 27.7202 bits (60), Expect = 7.691e-34
Identity = 7/25 (28.00%), Postives = 18/25 (72.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +++RE F++A +  P
Sbjct:  229 LVQKYIGEGARMVRELFELAKEKSP 253          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.182e-33
Identity = 71/175 (40.57%), Postives = 110/175 (62.86%), Query Frame = 2
Query:  236 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            RI+   L       ++ERL   E +    RS++  LR  P   G++ E++D++ AIV +  GP + V I  ++DK +L PG  + +  + ++++ +L    DP V   +V + P  +Y DIGGL  Q+QE++E +ELPL HPEL+E++GI PPKGV+LYG PG GKTL+ KA+A+
Sbjct:   22 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAH 193          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.182e-33
Identity = 71/175 (40.57%), Postives = 110/175 (62.86%), Query Frame = 2
Query:  236 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            RI+   L       ++ERL   E +    RS++  LR  P   G + E++D++ AIV +  GP + V I  ++++D+L PG  + +  + ++++ LL    DP V   +V + P  +Y DIGGL  Q+QE++E +ELPL HPEL+E++GI PPKGV+LYG PG GKTL+ KA+A+
Sbjct:   25 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAH 196          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.054e-32
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = 2
Query:  236 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            RI+   L       ++ERL   E +    RS++  LR  P   G + E++DE+ AIV +  GP + V I  ++D+ +L PG  + +  + ++VV +L    DP V   +V + P  +Y DIGGL  Q+QE++E +ELPL HPEL+E++GI PPKGV+LYG PG GKTL+ KA+A+
Sbjct:   25 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAH 196          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.107e-32
Identity = 66/159 (41.51%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  281 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            +E++  Q+E  E  ++++  L   P     + E+ID+N  +V SS GP   V + + VD   L+PG  + ++N+  ++V +L    DP+V  M+VE+ P   + D+GGL+ QI+EI E V LP+ +P L+ ++GI PPKGV+L+G PGTGKTLL KAVA
Sbjct:   37 KEKISLQKE-LEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVA 194          

HSP 2 Score: 29.261 bits (64), Expect = 3.107e-32
Identity = 9/25 (36.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            +++ F+G+G +L+RE F++A +  P
Sbjct:  209 LVNKFIGEGARLVREIFRLAREKAP 233          
The following BLAST results are available for this feature:
BLAST of DY260319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSMR_METPE2.052e-3442.48Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_THEGJ4.281e-3442.29Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METHJ4.535e-3444.44Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METAC5.905e-3438.71Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METB67.687e-3445.10Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_UNCMA7.691e-3438.78Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_PYRFU6.182e-3340.57Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRAB6.182e-3340.57Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRHO1.054e-3241.71Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_AERPE3.107e-3241.51Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260319 ID=DY260319; Name=DY260319; organism=Citrus clementina; type=EST; length=1206bp
CGAAATCTAGTGTGATGCCCTGGGTCAGGGAACACCGGGAGGTCTGAACC
GGCAAGGTCCAGGAGGTGACCGCCAGGGAGATGGAGCGGATAAGAAAGAT
AAAAAATTCGAGCCTGCCGCTCCTCCGGCCCGTGTGGGCCGCAAGCAACG
AAAGCAGAAAGGACCAGAAGCGGCGGCCCGCCTTCCGACCGTTACGCCGC
TGAGTAAGTGCAAGCTGAGGCTTTTAAAGCTTGAGAGGATAAAAGATTAT
CTCTTGATGGAAGAGGAGTTTGTTACGAATCAGGAGAGATTGAAGCCGCA
GGAAGAGAAGGCGGAGGAAGATCGGTCAAAGGTTGACGATCTGAGAGGTT
CGCCGATGAGCGTTGGTAATTTGGAGGAGTTGATTGATGAGAATCACGCC
ATTGTTTCGTCGTCGGTGGGGCCCGAGTATTACGTCGGGATTTTGTCCTT
TGTTGATAAGGATCAGCTGGAGCCTGGCTGTGCTATTTTGATGCACAATA
AGGTCCTTTCGGTGGTTGGGCTTCTGCAAGATGAAGTAGATCCAATGGTG
TCTGTGATGAAGGTTGAGAAGGCTCCCTTGGAGTCTTATGCTGATATTGG
AGGTTTAGATGCCCAGATACAGGAGATTAAAGAACCTGTTGAACTTCCTC
TTACTCATCCCGAACTTTATGAAGATATCGGTATCAAGCCTCCTAAGGGA
GTTATATTGTATGGAGAGCCTGGAACCGGCAAGACACTGCTTTGCAAGGC
TGTGGCAAATTCACCTCCGCCACTTTCCTGCCTGTTGGCCGTAGTGAATT
ATTTCCAACTTCCTGGGTGATGGACCCAAATTAATAAGGGAATTTTTCCA
AGTTGCCGATGATTCGCCCCCCTTCCCCCCCCTCCTGGCTAAAATGAAGC
CATTTGTCCCAAAAGGGATCAACCCCCCCCCGGGGCCCAACTTTAAATCC
CAAAACCCCCTTTCGGGACCCCCTCAACCCCTTTGGATGGTTTTTCATCC
AGAGGAAAAACTACAACCATTTTTTCGCACCACCCCCAAATTACAGCCCC
CGCGCCCCCCCTTTCCTTCCCCCCCGTCGCAATAAAAAAAAAAAAATCGA
AATTCTCTCCCCTCCCCAGAATCCCCACAACAACGAAAAACCCACCCTTT
CCCCCACACCCCCCCCCCCCGCGGCGGAGCACACCCTTCTGCCTCCGAAC
TAGCGT
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