DY260319

Overview
NameDY260319
Unique NameDY260319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.631e-30
Identity = 66/181 (36.46%), Postives = 110/181 (60.77%), Query Frame = 2 
Query:  230 LERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            + +I++  ++  + + N  RL+ Q      +    + ++  L+     VG + +++ +   ++  S   +Y V I   ++   L PG  + + N   ++  +L +++DP+VS+MKVEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL+E +GI  PKGVI+YG PGTGKTLL +AVA+
Sbjct:   32 IAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAH 212

HSP 2 Score: 26.5646 bits (57), Expect = 1.631e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G K++RE F +A +  P
Sbjct:  226 LVQKYIGEGSKMVRELFVMAREHAP 250
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.632e-30
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I++  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

HSP 2 Score: 26.5646 bits (57), Expect = 1.632e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  219 LVQKFIGEGARMVRELFVMAREHAP 243
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.632e-30
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I++  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

HSP 2 Score: 26.5646 bits (57), Expect = 1.632e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  219 LVQKFIGEGARMVRELFVMAREHAP 243
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.632e-30
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I++  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

HSP 2 Score: 26.5646 bits (57), Expect = 1.632e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  219 LVQKFIGEGARMVRELFVMAREHAP 243
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.632e-30
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I++  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

HSP 2 Score: 26.5646 bits (57), Expect = 1.632e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  219 LVQKFIGEGARMVRELFVMAREHAP 243
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.632e-30
Identity = 71/186 (38.17%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I++  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205

HSP 2 Score: 26.5646 bits (57), Expect = 1.632e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  219 LVQKFIGEGARMVRELFVMAREHAP 243
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.126e-30
Identity = 59/168 (35.12%), Postives = 112/168 (66.67%), Query Frame = 2 
Query:  254 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            L+EE+  + Q  ++   ++    +++++ +   P+    + +++ +   +V SS GP   V I S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL +PE++ +IG++PPKGV+LYG PGTGKT+L KAVA
Sbjct:   22 LLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189

HSP 2 Score: 25.0238 bits (53), Expect = 2.126e-30
Identity = 8/21 (38.10%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  810 FLGDGPKLIREFFQVADDSPP 872
            F+G+G +++RE F++A    P
Sbjct:  208 FVGEGARIVRELFEMAKRKAP 228
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.595e-30
Identity = 71/186 (38.17%), Postives = 108/186 (58.06%), Query Frame = 2 
Query:  215 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            LR   L +I+D  L+  +   N  RL+ Q  +        R ++  L+     VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VDP+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   15 LRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 200

HSP 2 Score: 26.5646 bits (57), Expect = 3.595e-30
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3 
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  214 LVQKFIGEGARMVRELFVMAREHAP 238
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.604e-30
Identity = 58/168 (34.52%), Postives = 111/168 (66.07%), Query Frame = 2 
Query:  254 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            L+EE+  + Q  ++   ++    +++++ +   P+    + +++ +   +V SS GP   V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+L KAVA
Sbjct:   22 LLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189

HSP 2 Score: 25.0238 bits (53), Expect = 3.604e-30
Identity = 8/21 (38.10%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  810 FLGDGPKLIREFFQVADDSPP 872
            F+G+G +++RE F++A    P
Sbjct:  208 FVGEGARIVRELFEMAKRKAP 228
[Close]
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.604e-30
Identity = 58/168 (34.52%), Postives = 111/168 (66.07%), Query Frame = 2 
Query:  254 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            L+EE+  + Q  ++   ++    +++++ +   P+    + +++ +   +V SS GP   V + S +D+  ++PG ++ ++ +  +++ +L  + DP+V  M++ + P  +Y++IGGL+ QI+E++E VELPL  PE++ +IG++PPKGV+LYG PGTGKT+L KAVA
Sbjct:   22 LLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVA 189

HSP 2 Score: 25.0238 bits (53), Expect = 3.604e-30
Identity = 8/21 (38.10%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:  810 FLGDGPKLIREFFQVADDSPP 872
            F+G+G +++RE F++A    P
Sbjct:  208 FVGEGARIVRELFEMAKRKAP 228
The following BLAST results are available for this feature:
BLAST of DY260319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PRS8_NAEFO1.631e-3036.4626S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_RAT1.632e-3038.1726S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.632e-3038.1726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.632e-3038.1726S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.632e-3038.1726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.632e-3038.1726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PSMR_SULSO2.126e-3035.12Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS8_XENLA3.595e-3038.1726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PSMR_SULIY3.604e-3034.52Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN3.604e-3034.52Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YC06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260319 ID=DY260319; Name=DY260319; organism=Citrus clementina; type=EST; length=1206bp
CGAAATCTAGTGTGATGCCCTGGGTCAGGGAACACCGGGAGGTCTGAACC
GGCAAGGTCCAGGAGGTGACCGCCAGGGAGATGGAGCGGATAAGAAAGAT
AAAAAATTCGAGCCTGCCGCTCCTCCGGCCCGTGTGGGCCGCAAGCAACG
AAAGCAGAAAGGACCAGAAGCGGCGGCCCGCCTTCCGACCGTTACGCCGC
TGAGTAAGTGCAAGCTGAGGCTTTTAAAGCTTGAGAGGATAAAAGATTAT
CTCTTGATGGAAGAGGAGTTTGTTACGAATCAGGAGAGATTGAAGCCGCA
GGAAGAGAAGGCGGAGGAAGATCGGTCAAAGGTTGACGATCTGAGAGGTT
CGCCGATGAGCGTTGGTAATTTGGAGGAGTTGATTGATGAGAATCACGCC
ATTGTTTCGTCGTCGGTGGGGCCCGAGTATTACGTCGGGATTTTGTCCTT
TGTTGATAAGGATCAGCTGGAGCCTGGCTGTGCTATTTTGATGCACAATA
AGGTCCTTTCGGTGGTTGGGCTTCTGCAAGATGAAGTAGATCCAATGGTG
TCTGTGATGAAGGTTGAGAAGGCTCCCTTGGAGTCTTATGCTGATATTGG
AGGTTTAGATGCCCAGATACAGGAGATTAAAGAACCTGTTGAACTTCCTC
TTACTCATCCCGAACTTTATGAAGATATCGGTATCAAGCCTCCTAAGGGA
GTTATATTGTATGGAGAGCCTGGAACCGGCAAGACACTGCTTTGCAAGGC
TGTGGCAAATTCACCTCCGCCACTTTCCTGCCTGTTGGCCGTAGTGAATT
ATTTCCAACTTCCTGGGTGATGGACCCAAATTAATAAGGGAATTTTTCCA
AGTTGCCGATGATTCGCCCCCCTTCCCCCCCCTCCTGGCTAAAATGAAGC
CATTTGTCCCAAAAGGGATCAACCCCCCCCCGGGGCCCAACTTTAAATCC
CAAAACCCCCTTTCGGGACCCCCTCAACCCCTTTGGATGGTTTTTCATCC
AGAGGAAAAACTACAACCATTTTTTCGCACCACCCCCAAATTACAGCCCC
CGCGCCCCCCCTTTCCTTCCCCCCCGTCGCAATAAAAAAAAAAAAATCGA
AATTCTCTCCCCTCCCCAGAATCCCCACAACAACGAAAAACCCACCCTTT
CCCCCACACCCCCCCCCCCCGCGGCGGAGCACACCCTTCTGCCTCCGAAC
TAGCGT
back to top