DY260319

Overview
NameDY260319
Unique NameDY260319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.975e-29
Identity = 64/188 (34.04%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  254 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENH--------------------AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            +M+ E +     L+   +K +E+  K+   +  P  V N+ EL+D +                     A++ +S    Y++ ++  VD ++L+PG  + ++     ++  L  E D  V  M+V++ P E Y+DIGGLD QIQE+ E + LP+ H E +E++GI+PPKGV++YG PGTGKTLL +A A
Sbjct:   38 IMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 225          

HSP 2 Score: 28.4906 bits (62), Expect = 2.975e-29
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+GDG KL+R+ F +A +  P
Sbjct:  240 LVQMFIGDGAKLVRDAFALAKEKAP 264          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.037e-29
Identity = 63/188 (33.51%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  254 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENH--------------------AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVA 757
            +M+ E +     L+  ++K +E+  K+   +  P  V N+ EL+D +                     A++ +S    Y++ ++  VD ++L+PG  + ++     ++  L  + D  V  M+V++ P E Y+DIGGLD QIQE+ E + LP+ H E +E++GI+PPKGV++YG PGTGKTLL +A A
Sbjct:   57 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 244          

HSP 2 Score: 28.4906 bits (62), Expect = 5.037e-29
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+GDG KL+R+ F +A +  P
Sbjct:  259 LVQMFIGDGAKLVRDAFALAKEKAP 283          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.041e-29
Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 2
Query:  230 LERIKDYLLMEEEFVTNQERLKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            L+ + +   ++ E   N  RL+ Q  +        R ++  L+     VG + +++ +N  +V      +Y V I   +D  +L P   + + N    +  +L  +VDP+V++MKVEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   37 LQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217          

HSP 2 Score: 25.409 bits (54), Expect = 5.041e-29
Identity = 7/25 (28.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +++RE F +A +  P
Sbjct:  231 LVQKYIGEGSRMVRELFVMAREHAP 255          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 2
Query:  281 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            +E+LK   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLL +AVA+
Sbjct:   30 REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 2
Query:  281 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            +E+LK   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLL +AVA+
Sbjct:   30 REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 2
Query:  281 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            +E+LK   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLL +AVA+
Sbjct:   30 REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.415e-29
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 2
Query:  281 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            +E+LK   ++ E+  + +  L+     VG + + + E   IV ++ GP Y VG    +DK +L+PG  + +    L+++  L  EVDP+V  M  E     SY++IGGL  QI+E++E +ELPLT+PEL++ +GI PPKG +LYG PGTGKTLL +AVA+
Sbjct:   30 REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.073e-29
Identity = 67/169 (39.64%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  257 MEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVANS 763
            +E    T +E L+  +++  +    +  L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E +ELPL +PEL+  +GIKPPKGV+LYG PGTGKTLL +A+A++
Sbjct:   28 LESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 196          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.551e-29
Identity = 67/180 (37.22%), Postives = 107/180 (59.44%), Query Frame = 2
Query:  233 ERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            ++I+D  L   +   N  RL+ Q      +    R ++  L+     VG + + + +N  +V      +Y V I   +D  +++P   + + N    ++ +L ++VDP+VS+M VEK P  +Y  +GGL+ QI+EIKE +ELP+ HPEL+E +GI  PKG++LYG PGTGKTLL +AVA+
Sbjct:   22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAH 201          

HSP 2 Score: 25.409 bits (54), Expect = 8.551e-29
Identity = 7/25 (28.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  ++G+G +++RE F +A +  P
Sbjct:  215 LVQKYIGEGSRMVRELFVMAREHAP 239          
BLAST of DY260319 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.551e-29
Identity = 68/181 (37.57%), Postives = 108/181 (59.67%), Query Frame = 2
Query:  230 LERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEPVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLCKAVAN 760
            + +I++  L+  E   N  RL+ Q      K    R ++  L+     VG + + +D+   +V      ++ V +   VD + +   C + + N+  ++  +L ++VDP+VS+M VEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLL +AVA+
Sbjct:   21 ITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 201          

HSP 2 Score: 26.5646 bits (57), Expect = 8.551e-29
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  798 IISNFLGDGPKLIREFFQVADDSPP 872
            ++  F+G+G +++RE F +A +  P
Sbjct:  215 LVQKFIGEGSRMVRELFVMAREHAP 239          
The following BLAST results are available for this feature:
BLAST of DY260319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PR6AA_XENLA2.975e-2934.0426S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6A_MOUSE5.037e-2933.5126S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS8B_ARATH5.041e-2938.6726S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS10_SPETR5.415e-2941.8826S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE5.415e-2941.8826S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN5.415e-2941.8826S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN5.415e-2941.8826S protease regulatory subunit S10B OS=Bos taurus... [more]
PS10B_ARATH7.073e-2939.6426S protease regulatory subunit S10B homolog B OS=... [more]
PRS8_SCHPO8.551e-2937.2226S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_MANSE8.551e-2937.5726S protease regulatory subunit 8 OS=Manduca sexta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260319 ID=DY260319; Name=DY260319; organism=Citrus clementina; type=EST; length=1206bp
CGAAATCTAGTGTGATGCCCTGGGTCAGGGAACACCGGGAGGTCTGAACC
GGCAAGGTCCAGGAGGTGACCGCCAGGGAGATGGAGCGGATAAGAAAGAT
AAAAAATTCGAGCCTGCCGCTCCTCCGGCCCGTGTGGGCCGCAAGCAACG
AAAGCAGAAAGGACCAGAAGCGGCGGCCCGCCTTCCGACCGTTACGCCGC
TGAGTAAGTGCAAGCTGAGGCTTTTAAAGCTTGAGAGGATAAAAGATTAT
CTCTTGATGGAAGAGGAGTTTGTTACGAATCAGGAGAGATTGAAGCCGCA
GGAAGAGAAGGCGGAGGAAGATCGGTCAAAGGTTGACGATCTGAGAGGTT
CGCCGATGAGCGTTGGTAATTTGGAGGAGTTGATTGATGAGAATCACGCC
ATTGTTTCGTCGTCGGTGGGGCCCGAGTATTACGTCGGGATTTTGTCCTT
TGTTGATAAGGATCAGCTGGAGCCTGGCTGTGCTATTTTGATGCACAATA
AGGTCCTTTCGGTGGTTGGGCTTCTGCAAGATGAAGTAGATCCAATGGTG
TCTGTGATGAAGGTTGAGAAGGCTCCCTTGGAGTCTTATGCTGATATTGG
AGGTTTAGATGCCCAGATACAGGAGATTAAAGAACCTGTTGAACTTCCTC
TTACTCATCCCGAACTTTATGAAGATATCGGTATCAAGCCTCCTAAGGGA
GTTATATTGTATGGAGAGCCTGGAACCGGCAAGACACTGCTTTGCAAGGC
TGTGGCAAATTCACCTCCGCCACTTTCCTGCCTGTTGGCCGTAGTGAATT
ATTTCCAACTTCCTGGGTGATGGACCCAAATTAATAAGGGAATTTTTCCA
AGTTGCCGATGATTCGCCCCCCTTCCCCCCCCTCCTGGCTAAAATGAAGC
CATTTGTCCCAAAAGGGATCAACCCCCCCCCGGGGCCCAACTTTAAATCC
CAAAACCCCCTTTCGGGACCCCCTCAACCCCTTTGGATGGTTTTTCATCC
AGAGGAAAAACTACAACCATTTTTTCGCACCACCCCCAAATTACAGCCCC
CGCGCCCCCCCTTTCCTTCCCCCCCGTCGCAATAAAAAAAAAAAAATCGA
AATTCTCTCCCCTCCCCAGAATCCCCACAACAACGAAAAACCCACCCTTT
CCCCCACACCCCCCCCCCCCGCGGCGGAGCACACCCTTCTGCCTCCGAAC
TAGCGT
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