DY260330

Overview
NameDY260330
Unique NameDY260330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1152
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.862e-31
Identity = 104/336 (30.95%), Postives = 149/336 (44.35%), Query Frame = 2
Query:   71 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIQDPDPKKPEDWDRQ--------------------------------------EYIPDPENKSPR------------AMMTFPRRYQIP---MPKTLMIGMMKKKVNGPPHPSPTPNYRGPWKPRKI 853
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT +L PD ++ IL+D     SG+L +D    + P + I+DP+ +KPEDWD +                                      EYIPDP+ + P               +  P+    P   + +  MI     K    P     PNY+G WKPRKI
Sbjct:   70 VYFADSFDRGSLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTSELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 403          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.431e-31
Identity = 104/336 (30.95%), Postives = 148/336 (44.05%), Query Frame = 2
Query:   71 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIQDPDPKKPEDWDRQ--------------------------------------EYIPDPENKSPR------------AMMTFPRRYQIP---MPKTLMIGMMKKKVNGPPHPSPTPNYRGPWKPRKI 853
            V+F + FD G  S W+ S  KKD+ T  E     GKW  D       P DKG+      + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E+   +F   TPY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT +L PD ++ IL+D     SG+L +D    + P + I+DP+ +KPEDWD +                                      EYIPDP+ + P               +  P+    P   + +  MI     K    P     PNY+G WKPRKI
Sbjct:   70 VYFADSFDRGSLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTAELSLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 403          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CLGN_BOVIN (Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.147e-31
Identity = 85/234 (36.32%), Postives = 119/234 (50.85%), Query Frame = 2
Query:   71 VFFEERFDDGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGE--VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIQDPDPKKPEDWDRQEYIPDPENKSP 709
            V+F E FD G  + WV S  KKD+  A      G W     K N  P D+G+      + +AISA   + F   DK LV Q+ V  +  +DCGG Y+KLL+    ++ + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD T+ +LID +    GSL  D    + PPK I+DP  +KP+DWD +  IPD     P
Sbjct:   56 VYFTETFDSGRLAGWVLSKAKKDDIDAEISIYDGRWEIEELKENRIPGDRGLVLKSRAKHHAISAVLAKPFIFADKPLVVQYEVNFQDGIDCGGAYIKLLADTDGLNLENFYDKTSYTIMFGPDKCG-EDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKRFFTDRKTHLYTLVMNPDDTFEVLIDQIVVNKGSLLEDVVPPINPPKEIEDPTDEKPDDWDERAKIPDASAVKP 288          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CLGN_MOUSE (Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 9.239e-31
Identity = 83/234 (35.47%), Postives = 119/234 (50.85%), Query Frame = 2
Query:   71 VFFEERFDDGWESRWVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIQDPDPKKPEDWDRQEYIPDPENKSP 709
            V+F E FD G  + WV S  KKD+  +      G W     K N  P D+G+      + +AI+A   + F   DK L+ Q+ V  +  +DCGG Y+KLL+  G++  + F   T Y+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT ++ PD T+ +LID      G+L  D    + PP+ I DP  KKPE+WD +  IPDP    P
Sbjct:   60 VYFTETFDSGNLAGWVLSKAKKDDMDSEIAIYDGRWEIEELKENQVPGDRGLVLKSKAKHHAIAAVLEKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTGDLILENFYDKTSYTIMFGPDKCG-EDYKLHLIFRHKHPKTGVFEEKHAKPPDVDLKEFFTDRKTHLYTLVMNPDDTFEVLIDQKVVNQGTLLDDVVPPINPPREIDDPSDKKPEEWDDRAKIPDPTAVKP 292          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 5.989e-30
Identity = 85/226 (37.61%), Postives = 120/226 (53.10%), Query Frame = 2
Query:   83 ERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFP---EFSNKDKTLVFQFSVKHEQKLDCGGGYMKLL----SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNK------LIKKEVPCETDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDWD----LLPPKTIQDPDPKKPEDWDRQEYIPDPENKSP 709
            E FD+ ++ RWV S+  + +   G W +   + +   +D G+  SE  + Y I  E       +  + T+V Q+  + ++ L+CGG Y+K L    +G V Q  F  D+PYSIMFGPD CG +T KVH IL +            +K       D L+HVYT +L+ D    IL+D  EK+ G+L S  D    L+P KTI DP+ KKPEDWD +  IPDP    P
Sbjct:   33 ESFDEPFDGRWVVSEKAEYQ---GVWKHEKSEGH---DDYGLLVSEKAKKYGIVKELDVDEPLNLNEGTVVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQG-FDNDSPYSIMFGPDKCG-ATNKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDPNAVKP 250          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX_SCHPO (Calnexin homolog OS=Schizosaccharomyces pombe GN=cal1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 8.949e-26
Identity = 93/315 (29.52%), Postives = 137/315 (43.49%), Query Frame = 2
Query:   83 ERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN--------DKGIQTSEDYRFYAISAEFPEFSNK-DKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG--TNKLIKKEVPCETDQL-----THVYTFLLRPDATYSILIDNVEKQSGSLYSDW--DLLPPKTIQDPDPKKPEDW-------------------DRQEYIPDPENKSPRAMMTFPRRYQIPMPKTLMIGMMKKKVNGPPHPSP---------------------TPNYRGPWKPRKI 853
            E+F   W  RW+ S  K+  N   E +Y  G+W  + +        + G+   ++   +AIS EF E  N+ +K LV Q+ V  E+ L+CGG Y+KLL+ E    +      Y IMFGPD CG + + VH I  +    T +  +K +      L     T++YT +++PD T+ + I+    + GSL+ D+   +LPP  I DP+  KP DW                   D    IPDP+   P   +     Y IP P+         + +G   PS                       PNYRGPW P  I
Sbjct:   44 EQFQGAWSERWIPSHAKRFVNGIEEMSYV-GEWTVEESSGPGALKGEAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLLA-EPTHGEMSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLY-IPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNYRGPWSPPMI 354          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX_CAEEL (Calnexin homolog OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.760e-24
Identity = 79/220 (35.91%), Postives = 105/220 (47.73%), Query Frame = 2
Query:  113 WVTSDWKKDENTA------GEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEF-PEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS--GEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTY----NGTNKLIKKEVPCE------TDQLTHVYTFLLRPDATYSILIDNVEKQSGSLYSDWD--LLPPKTIQDPDPKKPEDWDRQEYIPDPENKSP 709
            W+ S  KKD+  +      GEW+  A        D G+      R +AI+A+    F+    T V Q+ +K E+  +CGGGY+KLLS   E D   F   T Y+IMFGPD CG +T KVH I  Y    NGT        P         D  TH++T +++P   YS+ +D      G++ SD    L PPK I D    KP DWD +E I D     P
Sbjct:   75 WIKSLAKKDDVDSDIAKYNGEWSIGAPTKVSIEGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKP 293          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALR_PIG (Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.530e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:   71 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDC 325
            ++F+E+F   DGW  RW+ S  K D    G +  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DC
Sbjct:   21 IYFKEQFLDGDGWTDRWIESKHKPD---FGRFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDC 105          
BLAST of DY260330 vs. ExPASy Swiss-Prot
Match: CALX_YEAST (Calnexin homolog OS=Saccharomyces cerevisiae GN=CNE1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.607e-14
Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 2
Query:  113 WVTSDWKKDENT---AGEWNYTAGKWNGDPNDKGI--QTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVD---QKKFGGDTP-YSIMFGPDICG-------YSTKKVHAILTYNGTNKLIKKEVPCETD-QLTHVYTFLLRPDA-TYSILIDNVE-------KQSGSLYSDWDLLPPKTIQDPDPKKPEDWDRQEYIPDPE 697
            W+TS+   +E +     +W  + G+  G   DKGI  +T           E P   ++  TLV Q+ +K +  L CGG ++KL+SG ++    K +  DT    ++FGPD C        ++  KV  I   +    L +  +   TD   +H+YT ++   A ++ ILID          +    +  +  + PP  I D    KP DWD +  IPDPE
Sbjct:   50 WITSEAVNNEGSKIYGAQWRLSQGRLQGSAWDKGIAVRTGNAAAMIGHLLETPINVSETDTLVVQYEIKLDNSLTCGGAFIKLMSGFMNVEALKHYAPDTEGVELVFGPDYCAPEINGVQFAINKVDKITHESKLRYLQEMPLSKLTDTSQSHLYTLIIDESAQSFQILIDGKTVMVREHIEDKKKVNFEPPITPPLMIPDVSVAKPHDWDDRIRIPDPE 269          
The following BLAST results are available for this feature:
BLAST of DY260330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALX_RAT1.862e-3130.95Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]
CALX_MOUSE2.431e-3130.95Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CLGN_BOVIN4.147e-3136.32Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1[more]
CLGN_MOUSE9.239e-3135.47Calmegin OS=Mus musculus GN=Clgn PE=2 SV=1[more]
CALX2_ARATH5.989e-3037.61Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_SCHPO8.949e-2629.52Calnexin homolog OS=Schizosaccharomyces pombe GN=c... [more]
CALX_CAEEL3.760e-2435.91Calnexin homolog OS=Caenorhabditis elegans GN=cnx-... [more]
CALR_PIG1.530e-1752.27Calreticulin (Fragment) OS=Sus scrofa GN=CALR PE=1... [more]
CALX_YEAST4.607e-1428.64Calnexin homolog OS=Saccharomyces cerevisiae GN=CN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YC18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260330 ID=DY260330; Name=DY260330; organism=Citrus clementina; type=EST; length=1152bp
GGCGAAATTAAACCCTAGCTTTCTCTCTCTAACTCTCCTCACTATCTTCC
TGACAATTGCCTCTGCTCACGTCTTCTTCGAAGAACGCTTTGACGATGGA
TGGGAAAGCCGGTGGGTTACATCTGATTGGAAGAAAGATGAGAACACGGC
TGGAGAATGGAACTACACTGCTGGGAAATGGAATGGGGACCCGAATGATA
AAGGTATTCAAACTAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAA
TTCCCTGAATTCAGCAACAAGGACAAGACACTCGTGTTCCAGTTTTCTGT
TAAGCACGAACAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTTA
GTGGCGAAGTTGATCAGAAGAAATTTGGTGGTGATACCCCTTACAGTATC
ATGTTTGGACCAGATATCTGTGGTTATAGCACTAAGAAAGTGCATGCCAT
TCTTACCTACAATGGAACAAACAAATTGATCAAGAAGGAAGTACCATGTG
AGACTGACCAACTCACTCATGTTTATACTTTCCTCCTCCGTCCAGATGCT
ACTTACAGCATCCTCATTGACAATGTGGAGAAACAATCTGGTAGCTTGTA
CTCCGATTGGGATCTCCTCCCTCCCAAGACCATCCAGGATCCTGACCCCA
AGAAACCTGAAGACTGGGACCGACAAGAATATATTCCCGATCCTGAAAAC
AAAAGCCCGAGGGCTATGATGACCTTCCCAAGGAGATACCAAATCCCGAT
GCCCAAAACCCTGATGATTGGGATGATGAAGAAGAAGGTGAATGGACCCC
CCCACCCCTCCCCAACCCCAAATTACAGGGGTCCCTGGAAACCCAGAAAA
ATAAAAACCCAATTACCAGGGCAAGGGGAAAGCTCCCATGATTGACCCCC
CCAATTTCACGAAGACCCCCACCCTTTTGTGCACCCCCACTTTAACTTCT
TTTGCCTTCAGTCTGGGCCCGGCGAACCTGGGCACCCCCGTTTTTCACTC
TTCTCTGTTTGGGAAAAACCCCCGACATCCCCTCCTCTACTTGCCCCCCA
CACCAACCGCGCGAAACCCCCCAAGGAGTCCCCCACGAACCCCCCCCTCT
CCTCCCCCCCCCCCCACTACACCAACAACCCGTCGCGGCCGGGACCCCCT
CC
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