DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_STRU0 (ATP synthase subunit alpha OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=atpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAI 261
            AMKKV G+L+L+LA YRE+ AF QFGSDLDAATQA LNRG R  E+LKQP + PLP+EKQ++++YA  +GF D +P+  I  +E+A+
Sbjct:  374 AMKKVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEILKQPLHKPLPVEKQVVILYALTHGFLDDVPVNDILAFEEAL 460          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_PELPD (ATP synthase subunit alpha OS=Pelobacter propionicus (strain DSM 2379) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEK---AILSSITPDLLQAL 297
            +MK+V G+L+L LAQYRE+AAFAQFGSDLD ATQ  L RG RL E+LKQPQY PL  EKQ+L+I+AA NGF D +P+  + +YE    A   +   DLL  L
Sbjct:  374 SMKQVAGTLRLNLAQYREMAAFAQFGSDLDKATQMQLARGERLVEILKQPQYRPLSNEKQVLIIFAANNGFLDELPVSTLRRYEDEMYAFFDNRQADLLSEL 475          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_HELMI (ATP synthase subunit alpha OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQAL 297
            AMK+V G L+LELAQYRE+AAFAQFGSDLD ATQA LNRG RL E+LKQ QY P+ +E+Q+ VI+AAVNG+ D + +  + ++E+  L  +  +  + L
Sbjct:  374 AMKQVAGRLRLELAQYRELAAFAQFGSDLDKATQARLNRGQRLVEILKQDQYKPMVVEEQVAVIFAAVNGYLDDIAVADVLKFEEGFLKYLRTEKAEIL 472          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_DESOH (ATP synthase subunit alpha OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSI 273
            AMK+V G+L+L++AQ+RE+ AFA FGSDLDAATQ  L RGARL E+LKQPQY PL +EKQ+ +++A  NG  D +PL+ IA YE  + + I
Sbjct:  374 AMKQVAGTLRLDMAQFRELEAFAAFGSDLDAATQRQLTRGARLVEILKQPQYKPLSMEKQVTILFAGTNGHLDELPLDAIAAYEAGLYTFI 464          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_DESDG (ATP synthase subunit alpha OS=Desulfovibrio desulfuricans (strain G20) GN=atpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYE 252
            AMK+V G+++L+LAQYRE+AAFAQFGSDLD ATQA LNRGARL E+LKQPQY P+P  +Q+  +YAA  GF D +P+  I ++E
Sbjct:  374 AMKQVAGTMRLDLAQYRELAAFAQFGSDLDKATQAKLNRGARLVELLKQPQYQPMPFNEQVASMYAATRGFMDDVPVASIRKFE 457          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA1_SYNAS (ATP synthase subunit alpha 1 OS=Syntrophus aciditrophicus (strain SB) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 58/120 (48.33%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILS---SITPDLLQALLGGLTNERKMELEPFLKQ 351
            AMK+V G+LKL+LAQYRE+A+FAQFGSDLD ATQA L+RG RL E+LKQPQ+ P+ + ++++V++A   GF D+  +EKI +YE  +L+   S   D++Q +      + K  + P L+Q
Sbjct:  375 AMKQVAGTLKLDLAQYRELASFAQFGSDLDKATQAQLDRGVRLVEILKQPQFQPMSLAEEVIVLFAGTRGFLDKYEVEKIKEYEPQVLAYMKSKHQDIMQEI------DDKKVISPELEQ 488          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_STRS7 (ATP synthase subunit alpha OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=atpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.268e-24
Identity = 51/87 (58.62%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAI 261
            AMK+V G+L+L+LA YRE+ AF QFGSDLDAATQA LNRG R  E+LKQP + PLP+EKQ++++YA  +GF D +P++ I  +E+A+
Sbjct:  374 AMKRVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEILKQPLHKPLPVEKQVVILYALTHGFLDDVPVDDILAFEEAL 460          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_STREM (ATP synthase subunit alpha OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=atpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.268e-24
Identity = 51/87 (58.62%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAI 261
            AMK+V G+L+L+LA YRE+ AF QFGSDLDAATQA LNRG R  E+LKQP + PLP+EKQ++++YA  +GF D +P++ I  +E+A+
Sbjct:  374 AMKRVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEILKQPLHKPLPVEKQVVILYALTHGFLDDVPVDDILAFEEAL 460          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_STRE4 (ATP synthase subunit alpha OS=Streptococcus equi subsp. equi (strain 4047) GN=atpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.268e-24
Identity = 51/87 (58.62%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAI 261
            AMK+V G+L+L+LA YRE+ AF QFGSDLDAATQA LNRG R  E+LKQP + PLP+EKQ++++YA  +GF D +P++ I  +E+A+
Sbjct:  374 AMKRVAGTLRLDLASYRELEAFTQFGSDLDAATQAKLNRGRRTVEILKQPLHKPLPVEKQVVILYALTHGFLDDVPVDDILAFEEAL 460          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_SILPO (ATP synthase subunit alpha OS=Silicibacter pomeroyi GN=atpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.268e-24
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKMELEPFLKQSA 357
            AM  V G +KL LAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE++KQPQY+PL   + + VI+A  NG+ D++ L  + ++E  +L  +     + LL  +TNE     +P +K  A
Sbjct:  384 AMSSVAGPVKLSLAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYSPLTNAEIVCVIFAGTNGYLDKVALADVGRWEAGLLQHLRGKHAE-LLAWITNE-----DPKIKDDA 496          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_STRU03.268e-2459.77ATP synthase subunit alpha OS=Streptococcus uberis... [more]
ATPA_PELPD3.268e-2457.84ATP synthase subunit alpha OS=Pelobacter propionic... [more]
ATPA_HELMI3.268e-2455.56ATP synthase subunit alpha OS=Heliobacterium modes... [more]
ATPA_DESOH3.268e-2458.24ATP synthase subunit alpha OS=Desulfococcus oleovo... [more]
ATPA_DESDG3.268e-2463.10ATP synthase subunit alpha OS=Desulfovibrio desulf... [more]
ATPA1_SYNAS3.268e-2448.33ATP synthase subunit alpha 1 OS=Syntrophus aciditr... [more]
ATPA_STRS74.268e-2458.62ATP synthase subunit alpha OS=Streptococcus equi s... [more]
ATPA_STREM4.268e-2458.62ATP synthase subunit alpha OS=Streptococcus equi s... [more]
ATPA_STRE44.268e-2458.62ATP synthase subunit alpha OS=Streptococcus equi s... [more]
ATPA_SILPO4.268e-2451.26ATP synthase subunit alpha OS=Silicibacter pomeroy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
back to top