DY260335

Overview
NameDY260335
Unique NameDY260335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUME (ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGICNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUMB (ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGICNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUC2 (ATP synthase subunit alpha OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGIRNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUAB (ATP synthase subunit alpha OS=Brucella abortus GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGIRNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA2 (ATP synthase subunit alpha OS=Brucella abortus (strain 2308) GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGIRNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA1 (ATP synthase subunit alpha OS=Brucella abortus (strain S19) GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.755e-29
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQYRE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGIRNEKAL 489          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_RAT (ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.675e-28
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G++KLELAQYREVAAFAQFGSDLDAATQ LL+RG RLTE+LKQ QY+P+ IE+Q+ VIYA V G+ D++   KI ++E A LS +     Q+LLG + ++ K+
Sbjct:  425 AMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFESAFLSHVVSQ-HQSLLGNIRSDGKI 532          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_METPB (ATP synthase subunit alpha OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.675e-28
Identity = 59/91 (64.84%), Postives = 78/91 (85.71%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSI 273
            AMKKV G +K ELAQYRE+AAFAQFGSDLDA+TQ LLNRGARLTE+LKQPQ++PL +E+Q+ VIYA VNG+ D++P+ K+ ++E  +L ++
Sbjct:  382 AMKKVAGKIKGELAQYREMAAFAQFGSDLDASTQRLLNRGARLTELLKQPQFSPLKMEEQVAVIYAGVNGYLDKLPVNKVREFEDQLLGTL 472          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_MOUSE (ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.187e-28
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V G++KLELAQYREVAAFAQFGSDLDAATQ LL+RG RLTE+LKQ QY+P+ IE+Q+ VIYA V G+ D++   KI ++E A LS +     Q+LLG + ++ K+
Sbjct:  425 AMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQ-HQSLLGNIRSDGKI 532          
BLAST of DY260335 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSU (ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.187e-28
Identity = 62/109 (56.88%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 AMKKVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLEKIAQYEKAILSSITPDLLQALLGGLTNERKM 327
            AMK+V GS+K ELAQ+RE+AAFAQFGSDLDAATQ LLNRGARLTE+LKQPQ++PL  E+Q+ VIYA VNG+ D++ + ++ ++E+ +L+S+  +  + +L G+ NE+ +
Sbjct:  382 AMKQVAGSIKGELAQHREMAAFAQFGSDLDAATQRLLNRGARLTELLKQPQFSPLKTEEQVAVIYAGVNGYLDKLAVNQVGKFEEGLLASLRTE-HKDVLEGIRNEKAL 489          
The following BLAST results are available for this feature:
BLAST of DY260335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_BRUME5.755e-2957.80ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUMB5.755e-2957.80ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUC25.755e-2957.80ATP synthase subunit alpha OS=Brucella canis (stra... [more]
ATPA_BRUAB5.755e-2957.80ATP synthase subunit alpha OS=Brucella abortus GN=... [more]
ATPA_BRUA25.755e-2957.80ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_BRUA15.755e-2957.80ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_RAT1.675e-2859.63ATP synthase subunit alpha, mitochondrial OS=Rattu... [more]
ATPA_METPB1.675e-2864.84ATP synthase subunit alpha OS=Methylobacterium pop... [more]
ATPA_MOUSE2.187e-2859.63ATP synthase subunit alpha, mitochondrial OS=Mus m... [more]
ATPA_BRUSU2.187e-2856.88ATP synthase subunit alpha OS=Brucella suis GN=atp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260335 ID=DY260335; Name=DY260335; organism=Citrus clementina; type=EST; length=1264bp
GCTATGAAAAAAGTTTGCGGTAGTTTAAAACTGGAGTTGGCACAATATCG
CGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTC
AGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAGCCG
CAATATGCGCCGCTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGC
TGTTAATGGGTTCTGTGATCGAATGCCACTAGAAAAAATTGCACAATATG
AGAAAGCCATTCTAAGTAGTATAACCCCGGATTTACTACAAGCACTTTTA
GGGGGGTTAACTAACGAAAGAAAGATGGAATTAGAACCTTTCTTAAAACA
AAGCGCTTTGCCTTACCTATGATGTAAGGCAAGGTCGCCCGCGACTGACA
AACTAAATCTCCTTTTCTTCTGAAGTCCCCTAATTATGGTATGGATCCTG
TCTCCAGTACCAATACCAATCCACAACTCATGCTTCTCTGAATACTCAGC
TATTCTTAGAAAACATTCCCTCATCTTCCTGTCACAAATTGCAGGTCTTT
ATTACACTACAACCCGTCCCCATTTGTTATCCCTAATCCTATACCCAATC
TGCTACCCAAACAACACAACCACAACTAAACAGCAGCGCCCCACCTGACG
CTACCTTCTAACCTGCCCAGGCCTTCTCATCTCTCTCCCACCCTCCCCTC
CCCGTCATCACGCTCACCTTATTCAAACTCATGACTCTCTACTTGCACAG
CAAACAGGTAACAGCCCATCCGCCTGACACAATCACTATCTTCACTACTA
CAAGCCTTCCCTCTACCACAGGACGCGCATGGACTCCTTCTATCATACAC
TACCAAACTACAACCTAAGCAACCTCTATATGAGTCAACAGAGAAAAAAA
CGACAACTTGCTACCAAACATCACGTGAGATTTAATAAAACGCCTCCCCA
CCAACAACACAAAATTCTACGTAATACACTAACTCCAGAGACTGCTCTGT
CTTTAATGCAAGACCCCTCCCTGACCCTATCTCCGTAAACTTTCCTCTCC
CCTCCACCCGCACGACGTACCTCCTACCCCCCACTCTCACTCACCCATTT
AATTTCTCTACACTCCAGCCCCCACGACAGGCGATCAATCTGAATCTGCA
CTAAATAAAGACTTACCCTCTTCGTCCCAAACATGTCCCGACCGTCTTCC
GTTGTACCCGCGCCACACCATTCTTATTTCTACCTTTAACTATTTAACTT
CACTACGCTTTGTA
back to top